miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32061_mmu-mir-410:mirbase
Length = 81
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 gtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacaga 62
Query: 61 tggcctgttttcaatac 77
|||||||||||||||||
Sbjct: 63 tggcctgttttcaatac 79
>32904_rno-mir-410:mirbase
Length = 76
Score = 149 bits (75), Expect = 3e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 3 acttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatg 60
Query: 63 gcctgttttcaatac 77
|||||||||||||||
Sbjct: 61 gcctgttttcaatac 75
>33363_bta-mir-410:mirbase
Length = 81
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 gtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacaga 62
Query: 61 tggcctgttttca 73
|||||||||||||
Sbjct: 63 tggcctgttttca 75
>33838_oar-mir-410:mirbase
Length = 126
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 gtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 gtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacaga 93
Query: 61 tggcctgttttca 73
|||||||||||||
Sbjct: 94 tggcctgttttca 106
>33839_oar-mir-410:mirbase
Length = 126
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 gtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 gtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacaga 93
Query: 61 tggcctgttttca 73
|||||||||||||
Sbjct: 94 tggcctgttttca 106
>27169_eca-mir-410:mirbase
Length = 74
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 6 tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 60
Query: 66 tgttttca 73
||| ||||
Sbjct: 61 tgtcttca 68
>27893_mml-mir-410:mirbase
Length = 80
Score = 123 bits (62), Expect = 2e-29
Identities = 72/74 (97%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gtacttgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacacag 59
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2 gtacctgaggagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacag 61
Query: 60 atggcctgttttca 73
||||||||||||||
Sbjct: 62 atggcctgttttca 75
>28640_hsa-mir-410:mirbase
Length = 80
Score = 115 bits (58), Expect = 5e-27
Identities = 71/74 (95%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gtacttgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacacag 59
|||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2 gtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacag 61
Query: 60 atggcctgttttca 73
||||||||||||||
Sbjct: 62 atggcctgttttca 75
>30365_ptr-mir-410:mirbase
Length = 79
Score = 115 bits (58), Expect = 5e-27
Identities = 71/74 (95%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gtacttgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacacag 59
|||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 gtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacag 60
Query: 60 atggcctgttttca 73
||||||||||||||
Sbjct: 61 atggcctgttttca 74
>30994_ppy-mir-410:mirbase
Length = 80
Score = 115 bits (58), Expect = 5e-27
Identities = 71/74 (95%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gtacttgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacacag 59
|||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2 gtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacag 61
Query: 60 atggcctgttttca 73
||||||||||||||
Sbjct: 62 atggcctgttttca 75
>26837_cfa-mir-410:mirbase
Length = 56
Score = 103 bits (52), Expect = 2e-23
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 13 aggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcctgt 68
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 aggttgtctgtgatgagttcgctttattaatgccgaatataacacagatggcctgt 56
