miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26773_cfa-mir-214:mirbase
Length = 110
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 65
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>33290_bta-mir-214:mirbase
Length = 110
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 65
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>34039_ssc-mir-214:mirbase
Length = 110
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 65
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>27428_mdo-mir-214:mirbase
Length = 110
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctca 65
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>27519_age-mir-214:mirbase
Length = 110
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 65
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>27625_sla-mir-214:mirbase
Length = 110
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 65
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>27809_mml-mir-214:mirbase
Length = 110
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 65
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>28236_mne-mir-214:mirbase
Length = 110
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 65
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>28330_ggo-mir-214:mirbase
Length = 110
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 65
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>28531_hsa-mir-214:mirbase
Length = 110
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 65
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>30118_ppa-mir-214:mirbase
Length = 110
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 65
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>30289_ptr-mir-214:mirbase
Length = 110
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 65
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>30907_ppy-mir-214:mirbase
Length = 110
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 65
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>31941_mmu-mir-214:mirbase
Length = 110
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 65
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>33026_rno-mir-3120:mirbase
Length = 117
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Minus
Query: 4 tggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacct 63
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 tggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacct 54
Query: 64 gtacagcaggcacagacaggcagtcacatgacaacccagcctgaa 108
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 gtacagcaggcacagacaggcagtcacatgacaacccagcctgaa 9
>31534_oan-mir-214:mirbase
Length = 118
Score = 196 bits (99), Expect = 2e-51
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8 ggctggacggagttgtcacgtgtctgcctgtctacacttgctgtgcagaacatcctctca 67
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcctga 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cctgtacagcaggcacagacaggcagtcacatgacaacccagcctga 114
>32804_rno-mir-214:mirbase
Length = 110
Score = 194 bits (98), Expect = 9e-51
Identities = 101/102 (99%)
Strand = Plus / Plus
Query: 4 tggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacct 63
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacct 68
Query: 64 gtacagcaggcacagacaggcagtcacatgacaacccagcct 105
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>25833_xtr-mir-214:mirbase
Length = 107
Score = 192 bits (97), Expect = 4e-50
Identities = 103/105 (98%)
Strand = Plus / Plus
Query: 1 ggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctca 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3 ggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctca 62
Query: 61 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 cctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
>26509_tgu-mir-214:mirbase
Length = 92
Score = 167 bits (84), Expect = 2e-42
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 6 gacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgt 65
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 gacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgt 60
Query: 66 acagcaggcacagacaggcagtcacatgacaa 97
||||||||||||||||||||||| ||||||||
Sbjct: 61 acagcaggcacagacaggcagtcgcatgacaa 92
>29245_hsa-mir-3120:mirbase
Length = 81
Score = 161 bits (81), Expect = 1e-40
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 15 gtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggc 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 gtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggc 22
Query: 75 acagacaggcagtcacatgac 95
|||||||||||||||||||||
Sbjct: 21 acagacaggcagtcacatgac 1
>29246_hsa-mir-3120:mirbase
Length = 81
Score = 161 bits (81), Expect = 1e-40
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 15 gtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggc 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 gtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggc 22
Query: 75 acagacaggcagtcacatgac 95
|||||||||||||||||||||
Sbjct: 21 acagacaggcagtcacatgac 1
>26001_gga-mir-214:mirbase
Length = 110
Score = 139 bits (70), Expect = 5e-34
Identities = 91/98 (92%)
Strand = Plus / Plus
Query: 8 cggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtac 67
||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||||||
Sbjct: 13 cggagttgtcatgtgtctgtctgtctacacttgctgtccataacatccactcacctgtac 72
Query: 68 agcaggcacagacaggcagtcacatgacaacccagcct 105
||| || |||||||||||||||| ||||||||||||||
Sbjct: 73 agcgggaacagacaggcagtcacctgacaacccagcct 110
>27097_eca-mir-214:mirbase
Length = 65
Score = 129 bits (65), Expect = 5e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 23 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 60
Query: 83 gcagt 87
|||||
Sbjct: 61 gcagt 65
>34368_dre-mir-214:mirbase
Length = 100
Score = 91.7 bits (46), Expect = 1e-19
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 21 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 80
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
Query: 81 aggcag 86
||||||
Sbjct: 77 aggcag 82
>34636_fru-mir-214:mirbase
Length = 99
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 19 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 78
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
Query: 79 acaggcag 86
||||||||
Sbjct: 78 acaggcag 85
>34784_tni-mir-214:mirbase
Length = 88
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 19 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 78
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 5 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 62
Query: 79 acaggcag 86
||||||||
Sbjct: 63 acaggcag 70
