miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33024_rno-mir-3074:mirbase
Length = 117
Score = 168 bits (85), Expect = 5e-43
Identities = 91/93 (97%)
Strand = Plus / Minus
Query: 5 ttggacccgccctccggtgcctactgagctgatatcagttctcattttacacactggctc 64
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 100 ttggacccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctc 41
Query: 65 agttcagcaggaacaggagtcgagccctagagc 97
|||||||||||||||||||||||||||| ||||
Sbjct: 40 agttcagcaggaacaggagtcgagcccttgagc 8
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 161 bits (81), Expect = 1e-40
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 9 acccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagtt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 acccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagtt 22
Query: 69 cagcaggaacaggagtcgagc 89
|||||||||||||||||||||
Sbjct: 21 cagcaggaacaggagtcgagc 1
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 161 bits (81), Expect = 1e-40
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 9 acccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagtt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 acccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagtt 22
Query: 69 cagcaggaacaggagtcgagc 89
|||||||||||||||||||||
Sbjct: 21 cagcaggaacaggagtcgagc 1
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Minus
Query: 7 ggacccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcag 66
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 85 ggacccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctcag 26
Query: 67 ttcagcaggaacaggagtcgagccc 91
|||||||||||||||||||||||||
Sbjct: 25 ttcagcaggaacaggagtcgagccc 1
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Minus
Query: 7 ggacccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcag 66
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 85 ggacccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctcag 26
Query: 67 ttcagcaggaacaggagtcgagccc 91
|||||||||||||||||||||||||
Sbjct: 25 ttcagcaggaacaggagtcgagccc 1
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 8 gacccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagt 60
Query: 68 tcagcaggaacaggagtcga 87
||||||||||||||||||||
Sbjct: 61 tcagcaggaacaggagtcga 80
>26413_tgu-mir-24:mirbase
Length = 132
Score = 153 bits (77), Expect = 3e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 6 tggacccgccctccggtgcctactgagctgatatcagttctcattttacacactggctca 65
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 48 tggacccgtcctccggtgcctactgagctgatatcagttctgattttacacactggctca 107
Query: 66 gttcagcaggaacaggagtcgagcc 90
|||||||||||||||||||||||||
Sbjct: 108 gttcagcaggaacaggagtcgagcc 132
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 135 bits (68), Expect = 6e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 16 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 76 aacaggag 83
||||||||
Sbjct: 61 aacaggag 68
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 6e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 16 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 76 aacaggag 83
||||||||
Sbjct: 61 aacaggag 68
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 6e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 16 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 76 aacaggag 83
||||||||
Sbjct: 61 aacaggag 68
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 6e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 16 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 76 aacaggag 83
||||||||
Sbjct: 61 aacaggag 68
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 6e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 16 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 76 aacaggag 83
||||||||
Sbjct: 61 aacaggag 68
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 6e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 16 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 76 aacaggag 83
||||||||
Sbjct: 61 aacaggag 68
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 6e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 16 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 76 aacaggag 83
||||||||
Sbjct: 61 aacaggag 68
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 133 bits (67), Expect = 3e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 17 tccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagga 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagga 60
Query: 77 acaggag 83
|||||||
Sbjct: 61 acaggag 67
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 2e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 16 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 75
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
Query: 76 aacaggag 83
||||||||
Sbjct: 61 aacaggag 68
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 2e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 16 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 75
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
Query: 76 aacaggag 83
||||||||
Sbjct: 61 aacaggag 68
>25908_gga-mir-24:mirbase
Length = 68
Score = 119 bits (60), Expect = 4e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 16 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 75
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
Query: 76 aacaggag 83
||||||||
Sbjct: 61 aacaggag 68
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 115 bits (58), Expect = 6e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 20 ggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaaca 79
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ggtgcctactgagctgatatcagttctcattgtacacactggctcagttcagcaggaaca 60
Query: 80 gg 81
||
Sbjct: 61 gg 62
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 97.6 bits (49), Expect = 1e-21
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 20 ggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagga 76
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ggtgcctactgagctgataacagttctgattttacacactggctcagttcagcagga 57
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 93.7 bits (47), Expect = 2e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 21 gtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaacag 80
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
Query: 81 gag 83
|||
Sbjct: 65 gag 67
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 93.7 bits (47), Expect = 2e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 21 gtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaacag 80
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
Query: 81 gag 83
|||
Sbjct: 65 gag 67
>31442_oan-mir-24:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 14 ccctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagca 73
|||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 8 ccctccagtgcctactgagctgatatcagttctc-gttgacccactggctcagttcagca 66
Query: 74 ggaacaggagt 84
|||||||||||
Sbjct: 67 ggaacaggagt 77
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 56 cactggctcagttcagcaggaacaggagtcgagccc 91
|||||||||||||||||||||||||||||| |||||
Sbjct: 58 cactggctcagttcagcaggaacaggagtccagccc 93
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 56 cactggctcagttcagcaggaacaggagtcgagccc 91
|||||||||||||||||||||||||||||| |||||
Sbjct: 36 cactggctcagttcagcaggaacaggagtccagccc 1
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 56 cactggctcagttcagcaggaacaggagtcgagccc 91
|||||||||||||||||||||||||||||| |||||
Sbjct: 36 cactggctcagttcagcaggaacaggagtccagccc 1
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 56 cactggctcagttcagcaggaacaggagtcgagccc 91
|||||||||||||||||||||||||||||| |||||
Sbjct: 58 cactggctcagttcagcaggaacaggagtccagccc 93
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 55 acactggctcagttcagcaggaacaggagtc 85
|||||||||||||||||||||||||||||||
Sbjct: 76 acactggctcagttcagcaggaacaggagtc 106
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 16 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 75
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
Query: 76 aacaggagt 84
|||||||||
Sbjct: 66 aacaggagt 74
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 56 cactggctcagttcagcaggaacaggagtc 85
||||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggagtc 70
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 57 actggctcagttcagcaggaacaggagtc 85
|||||||||||||||||||||||||||||
Sbjct: 44 actggctcagttcagcaggaacaggagtc 72
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 54 cacactggctcagttcagcaggaacagga 82
|||||||||||||||||||||||||||||
Sbjct: 45 cacactggctcagttcagcaggaacagga 73
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 54 cacactggctcagttcagcaggaacagga 82
|||||||||||||||||||||||||||||
Sbjct: 45 cacactggctcagttcagcaggaacagga 73
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 54 cacactggctcagttcagcaggaacagg 81
||||||||||||||||||||||||||||
Sbjct: 45 cacactggctcagttcagcaggaacagg 72
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 57 actggctcagttcagcaggaacaggagt 84
||||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggagt 79
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 57 actggctcagttcagcaggaacaggagt 84
||||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggagt 79
>26961_eca-mir-24:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 actggctcagttcagcaggaacaggag 83
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>28270_ggo-mir-24:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 acactggctcagttcagcaggaacagg 81
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 acactggctcagttcagcaggaacagg 81
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 acactggctcagttcagcaggaacagg 81
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 acactggctcagttcagcaggaacagg 81
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 acactggctcagttcagcaggaacagg 81
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>25444_pma-mir-24:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 56 cactggctcagttcagcaggaacaggagtc 85
||||||||||||||||||||||||| ||||
Sbjct: 55 cactggctcagttcagcaggaacagaagtc 84
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 actggctcagttcagcaggaacagg 81
|||||||||||||||||||||||||
Sbjct: 38 actggctcagttcagcaggaacagg 62
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 actggctcagttcagcaggaacagg 81
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 actggctcagttcagcaggaacagg 81
|||||||||||||||||||||||||
Sbjct: 49 actggctcagttcagcaggaacagg 73
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 ctggctcagttcagcaggaacagg 81
||||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacagg 78
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 ctggctcagttcagcaggaacagg 81
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 ctggctcagttcagcaggaacagg 81
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73