miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40342_rco-MIR162:mirbase
Length = 101
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 61
Query: 61 aacgcatgaatcgatcgataaacctctgcatccagc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 62 aacgcatgaatcgatcgataaacctctgcatccagc 97
>41220_csi-MIR162:mirbase
Length = 201
Score = 89.7 bits (45), Expect = 3e-19
Identities = 86/97 (88%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaa-ata 59
||||||||||||||||||||||||| ||| || || |||||||||||||| | || | |
Sbjct: 87 cactggaggcagcggttcatcgatcactttgtgcaa-attttgttgtgaaaaataacaca 145
Query: 60 aaacgcatgaatcgatcgataaacctctgcatccagc 96
||| ||||||||||||||||||||||||||||||||
Sbjct: 146 aaatacatgaatcgatcgataaacctctgcatccagc 182
>41046_ghr-MIR162a:mirbase
Length = 148
Score = 87.7 bits (44), Expect = 1e-18
Identities = 85/96 (88%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
|||||||||||||||||||||||||||||||| || |||||||||||| | | || |
Sbjct: 22 cactggaggcagcggttcatcgatctcttcct-gagaattttgttgtgaga-ataacaca 79
Query: 61 aacgcatgaatcgatcgataaacctctgcatccagc 96
|| ||||||||||||||||||||||||||||||||
Sbjct: 80 aatacatgaatcgatcgataaacctctgcatccagc 115
>41090_tcc-MIR162:mirbase
Length = 131
Score = 85.7 bits (43), Expect = 5e-18
Identities = 84/95 (88%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
|||||||||||||||||||||||||||||||||| | |||||||||||| | | || |
Sbjct: 19 cactggaggcagcggttcatcgatctcttcctggga-attttgttgtgaga-ataacaca 76
Query: 61 aacgcatgaatcgatcgataaacctctgcatccag 95
|| ||||| |||||||||||||||||||||||||
Sbjct: 77 aatacatgattcgatcgataaacctctgcatccag 111
>40329_cpa-MIR162a:mirbase
Length = 109
Score = 83.8 bits (42), Expect = 2e-17
Identities = 85/96 (88%), Gaps = 5/96 (5%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
|||||||||||||||||||||||||||||||||| || |||| ||||||| || | |
Sbjct: 11 cactggaggcagcggttcatcgatctcttcctgg--gaatttggtgtgaaa-aatcacag 67
Query: 61 aacgcatgaatcgatcgataaacctctgcatccagc 96
|| ||||||||||||||||||||||||||||||||
Sbjct: 68 aa--catgaatcgatcgataaacctctgcatccagc 101
>41313_ptc-MIR162a:mirbase
Length = 107
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctgg 34
||||||||||||||||||||||||||||||||||
Sbjct: 9 cactggaggcagcggttcatcgatctcttcctgg 42
>39813_aly-MIR162b:mirbase
Length = 184
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 64 gcatgaatcgatcgataaacctctgcatccagc 96
|||||||||||||||||||||||||||||||||
Sbjct: 102 gcatgaatcgatcgataaacctctgcatccagc 134
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 ctggaggcagcggttcatcgatc 25
|||||||||||||||||||||||
Sbjct: 50 ctggaggcagcggttcatcgatc 72
>40437_gma-MIR162:mirbase
Length = 102
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 65 catgaatcgatcgataaacctctgcatccagc 96
||||||||||||||||||||||||||||||||
Sbjct: 63 catgaatcgatcgataaacctctgcatccagc 94
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctg 33
||||||| |||||||||||||||||||||||||
Sbjct: 8 cactggatgcagcggttcatcgatctcttcctg 40
>39812_aly-MIR162a:mirbase
Length = 228
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 ctggaggcagcggttcatcgatctcttcctgg 34
||||||||||||||||||||||||||||||||
Sbjct: 68 ctggaggcagcggttcatcgatctcttcctgg 99
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 59 aaaacgcatgaatcgatcgataaacctctgcatccagc 96
|||| |||||||| ||||||||||||||||||||||||
Sbjct: 120 aaaaagcatgaatagatcgataaacctctgcatccagc 157
>41315_ptc-MIR162c:mirbase
Length = 107
Score = 61.9 bits (31), Expect = 8e-11
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgt 47
|||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct: 9 cactggaggcagcggttcatcgatcttttcct-gaagatttttttgt 54
>41314_ptc-MIR162b:mirbase
Length = 107
Score = 61.9 bits (31), Expect = 8e-11
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgt 47
|||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct: 9 cactggaggcagcggttcatcgatcttttcct-gaagatttttttgt 54
>40024_ath-MIR162a:mirbase
Length = 140
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 ctggaggcagcggttcatcgatctcttcctg 33
|||||||||||||||||||||||||||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 64 gcatgaatcgatcgataaacctctgcatccagc 96
|||||||| ||||||||||||||||||||||||
Sbjct: 78 gcatgaatagatcgataaacctctgcatccagc 110
>41578_vvi-MIR162:mirbase
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctg 33
||||||| |||||||||||||||||||||||||
Sbjct: 7 cactggatgcagcggttcatcgatctcttcctg 39
>40025_ath-MIR162b:mirbase
Length = 111
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 68 gaatcgatcgataaacctctgcatccagc 96
|||||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccagc 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 ctggaggcagcggttcatcgatc 25
|||||||||||||||||||||||
Sbjct: 12 ctggaggcagcggttcatcgatc 34
>42502_sbi-MIR162:mirbase
Length = 127
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 68 gaatcgatcgataaacctctgcatccag 95
||||||||||||||||||||||||||||
Sbjct: 100 gaatcgatcgataaacctctgcatccag 127
>41929_osa-MIR162a:mirbase
Length = 171
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 68 gaatcgatcgataaacctctgcatccag 95
||||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>40663_mtr-MIR162:mirbase
Length = 124
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 65 catgaatcgatcgataaacctctgcatccagc 96
||||||||| ||||||||||||||||||||||
Sbjct: 77 catgaatcggtcgataaacctctgcatccagc 108
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctg 33
||||||| |||||||||||||||||| ||||||
Sbjct: 19 cactggatgcagcggttcatcgatctgttcctg 51
>41930_osa-MIR162b:mirbase
Length = 134
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 61 aacgcatgaatcgatcgataaacctctgcatccag 95
|||||| |||||||||||||| |||||||||||||
Sbjct: 90 aacgcaggaatcgatcgataagcctctgcatccag 124
>41736_bdi-MIR162:mirbase
Length = 133
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 68 gaatcgatcgataaacctctgcatcc 93
||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatcc 129
>42708_zma-MIR162:mirbase
Length = 130
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 68 gaatcgatcgataaacctctgcatccag 95
|||||| |||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>41530_sly-MIR162:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 68 gaatcgatcgataaacctctgcatccag 95
|||||| |||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
