miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40355_rco-MIR168:mirbase
Length = 131
Score = 260 bits (131), Expect = 3e-70
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 14 ctaattcgcttggtgcaggtcgggaactgattggcttttctatttctaatgatttccagg 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctaattcgcttggtgcaggtcgggaactgattggcttttctatttctaatgatttccagg 60
Query: 74 cggcgaaaagttattggtcaagattagatggaaagtgaattggatcccgccttgcatcaa 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cggcgaaaagttattggtcaagattagatggaaagtgaattggatcccgccttgcatcaa 120
Query: 134 ctgaatcgaag 144
|||||||||||
Sbjct: 121 ctgaatcgaag 131
>41215_crt-MIR168:mirbase
Length = 201
Score = 97.6 bits (49), Expect = 2e-21
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 51
Score = 73.8 bits (37), Expect = 3e-14
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 110 gaattggatcccgccttgcatcaactgaatcgaagaccggggtga 154
|||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 134 gaattggatcccgccttgcatcaactgaatcggagaccgaggtga 178
>41210_ccl-MIR168:mirbase
Length = 176
Score = 97.6 bits (49), Expect = 2e-21
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 50
Score = 71.9 bits (36), Expect = 1e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 110 gaattggatcccgccttgcatcaactgaatcgaagaccggggtg 153
|||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 133 gaattggatcccgccttgcatcaactgaatcggagaccgaggtg 176
>41101_tcc-MIR168:mirbase
Length = 167
Score = 97.6 bits (49), Expect = 2e-21
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 51
Score = 73.8 bits (37), Expect = 3e-14
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 110 gaattggatcccgccttgcatcaactgaatcgaagaccggggtga 154
|||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 118 gaattggatcccgccttgcatcaactgaatcggagaccgcggtga 162
>40044_ath-MIR168b:mirbase
Length = 124
Score = 81.8 bits (41), Expect = 1e-16
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
|||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattggct 49
>41348_ptc-MIR168b:mirbase
Length = 136
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 9 ggtctctaattcgcttggtgcaggtcgggaactgatt 45
|||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaactgatt 37
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 104 gaaagtgaattggatcccgccttgcatcaactgaatcg 141
||||| ||||||||||||||||||||||||||||||||
Sbjct: 95 gaaagagaattggatcccgccttgcatcaactgaatcg 132
>39833_aly-MIR168b:mirbase
Length = 176
Score = 73.8 bits (37), Expect = 3e-14
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 45
|||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 25 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgatt 69
Score = 40.1 bits (20), Expect = 5e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 116 gatcccgccttgcatcaactgaatcgaagaccggggtgaa 155
||||||| |||| ||||||||||||| || ||| ||||||
Sbjct: 110 gatcccgtcttgtatcaactgaatcggagtccgaggtgaa 149
>40448_gma-MIR168:mirbase
Length = 125
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
Score = 67.9 bits (34), Expect = 2e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 110 gaattggatcccgccttgcatcaactgaatcgaagaccggggtgaa 155
|||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct: 79 gaattggatcccgccttgcatcaactgaatcggaggccgcggtgaa 124
>41347_ptc-MIR168a:mirbase
Length = 160
Score = 65.9 bits (33), Expect = 8e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 9 ggtctctaattcgcttggtgcaggtcgggaactgatt 45
||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ggtctctgattcgcttggtgcaggtcgggaactgatt 37
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 110 gaattggatcccgccttgcatcaactgaatcg 141
||||||||||||||||||||||||||||||||
Sbjct: 125 gaattggatcccgccttgcatcaactgaatcg 156
>40271_bna-MIR168:mirbase
Length = 133
Score = 65.9 bits (33), Expect = 8e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 5 cggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
|||||| |||| | |||||||||||||||||||||||||||||||
Sbjct: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggct 48
>41596_vvi-MIR168:mirbase
Length = 132
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 9 ggtctctaattcgcttggtgcaggtcgggaac 40
||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaac 32
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 116 gatcccgccttgcatcaactgaatcgaagac 146
|||||||||||||||||||||||||| ||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggagac 129
>40043_ath-MIR168a:mirbase
Length = 138
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 112 attggatcccgccttgcatcaactgaatcg 141
||||||||||||||||||||||||||||||
Sbjct: 96 attggatcccgccttgcatcaactgaatcg 125
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcgggaac 40
||||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcgggaac 39
>39832_aly-MIR168a:mirbase
Length = 155
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 112 attggatcccgccttgcatcaactgaatcg 141
||||||||||||||||||||||||||||||
Sbjct: 102 attggatcccgccttgcatcaactgaatcg 131
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcgggaac 40
||||||||||||||||||||||||
Sbjct: 22 attcgcttggtgcaggtcgggaac 45
>42742_zma-MIR168b:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 115 ggatcccgccttgcatcaactgaatcg 141
||||||||||||||||||| |||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcg 89
