miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40391_rco-MIR408:mirbase
Length = 92
Score = 182 bits (92), Expect = 4e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 24 aaagactgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggct 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagactgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggct 60
Query: 84 ctacccctgcactgcctcttccctggcttccg 115
||||||||||||||||||||||||||||||||
Sbjct: 61 ctacccctgcactgcctcttccctggcttccg 92
>41463_ptc-MIR408:mirbase
Length = 105
Score = 97.6 bits (49), Expect = 2e-21
Identities = 86/97 (88%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 16 agacagacaaagactgggaacaggcagtgcatggatggggctactaacagaaaacatctg 75
||||||| ||||| |||||||||||| |||||||||| ||||||||||||| | ||
Sbjct: 3 agacagatgaagacggggaacaggcagagcatggatggagctactaacagaagtact-tg 61
Query: 76 ttttggctctacccctgcactgcctcttccctggctt 112
|||||||||||||| ||||||||||||||||||||||
Sbjct: 62 ttttggctctacccatgcactgcctcttccctggctt 98
>40108_ath-MIR408:mirbase
Length = 218
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 72 tctgttttggctctacccctgcactgcctcttccctggct 111
||||||||| |||||||| |||||||||||||||||||||
Sbjct: 102 tctgttttgtctctacccatgcactgcctcttccctggct 141
>39897_aly-MIR408:mirbase
Length = 211
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 72 tctgttttggctctacccctgcactgcctcttccctggct 111
||||||||| |||||||| |||||||||||||||||||||
Sbjct: 99 tctgttttgtctctacccatgcactgcctcttccctggct 138
>41683_vvi-MIR408:mirbase
Length = 107
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 73 ctgttttggctctacccctgcactgcctcttccctggct 111
||||||| ||||||||| |||||||||||||||||||||
Sbjct: 60 ctgtttttgctctacccatgcactgcctcttccctggct 98
>41252_csi-MIR408:mirbase
Length = 153
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 72 tctgttttggctctacccctgcactgcctcttccctggct 111
||||||||||||| ||| |||||||||||||||||||||
Sbjct: 102 tctgttttggctcctcccatgcactgcctcttccctggct 141
>42474_ssp-MIR408d:mirbase
Length = 180
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 86 acccctgcactgcctcttccctggct 111
||||||||||||||||||||||||||
Sbjct: 154 acccctgcactgcctcttccctggct 179
>42465_sof-MIR408d:mirbase
Length = 215
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 86 acccctgcactgcctcttccctggct 111
||||||||||||||||||||||||||
Sbjct: 172 acccctgcactgcctcttccctggct 197
>42830_zma-MIR408b:mirbase
Length = 147
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 122 cccctgcactgcctcttccctggct 146
>42829_zma-MIR408:mirbase
Length = 191
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 149 cccctgcactgcctcttccctggct 173
>42600_sbi-MIR408:mirbase
Length = 205
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 181 cccctgcactgcctcttccctggct 205
>42473_ssp-MIR408a:mirbase
Length = 248
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 223 cccctgcactgcctcttccctggct 247
>42464_sof-MIR408c:mirbase
Length = 286
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 244 cccctgcactgcctcttccctggct 268
>42463_sof-MIR408b:mirbase
Length = 286
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 244 cccctgcactgcctcttccctggct 268
>42462_sof-MIR408a:mirbase
Length = 283
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 241 cccctgcactgcctcttccctggct 265
>42052_osa-MIR408:mirbase
Length = 213
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 150 cccctgcactgcctcttccctggct 174
>42647_tae-MIR408:mirbase
Length = 187
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 ccctgcactgcctcttccctggct 111
||||||||||||||||||||||||
Sbjct: 134 ccctgcactgcctcttccctggct 157
>39490_ppt-MIR408b:mirbase
Length = 144
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 91 tgcactgcctcttccctggcttcc 114
||||||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggcttcc 117
>41193_aqc-MIR408:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 91 tgcactgcctcttccctggct 111
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
>40405_ahy-MIR408:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tgcactgcctcttccctggct 111
|||||||||||||||||||||
Sbjct: 82 tgcactgcctcttccctggct 102
>40404_ahy-MIR408:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tgcactgcctcttccctggct 111
|||||||||||||||||||||
Sbjct: 82 tgcactgcctcttccctggct 102
>39742_smo-MIR408:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tgcactgcctcttccctggct 111
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>39428_pta-MIR408:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tgcactgcctcttccctggct 111
|||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggct 85
>42466_sof-MIR408e:mirbase
Length = 283
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 88 ccctgcactgcctcttccctggct 111
|||||||||| |||||||||||||
Sbjct: 242 ccctgcactgactcttccctggct 265
