miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40392_rco-MIR535:mirbase
Length = 91
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 6 tttgttgacaacgagagagagcacgcttgttagccttcatgtaaggaacatggttgcaca 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttgttgacaacgagagagagcacgcttgttagccttcatgtaaggaacatggttgcaca 60
Query: 66 ccagcgtgctccctatcgttgtcaat 91
||||||||||||||||||||||||||
Sbjct: 61 ccagcgtgctccctatcgttgtcaat 86
>41689_vvi-MIR535b:mirbase
Length = 101
Score = 56.0 bits (28), Expect = 4e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 10 ttgacaacgagagagagcacgcttgttagccttcatgtaaggaacatg 57
||||||||||||||||||||||| || ||| |||||| |||||||||
Sbjct: 10 ttgacaacgagagagagcacgctagtcagcattcatgcgaggaacatg 57
>41688_vvi-MIR535a:mirbase
Length = 101
Score = 56.0 bits (28), Expect = 4e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 10 ttgacaacgagagagagcacgcttgttagccttcatgtaaggaacatg 57
||||||||||||||||||||||| || ||| |||||| |||||||||
Sbjct: 10 ttgacaacgagagagagcacgctagtcagcattcatgcgaggaacatg 57
>41159_tcc-MIR535:mirbase
Length = 120
Score = 56.0 bits (28), Expect = 4e-09
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 10 ttgacaacgagagagagcacgcttgttagccttcatgtaaggaacatggttgcacaccag 69
||||||||||||||||||||||| ||| || ||| || |||| |||||| || || ||
Sbjct: 99 ttgacaacgagagagagcacgctcgttggcattcttgcaagg-acatggatgtgtacaag 41
Query: 70 cgtgctccctatcgttgtca 89
||||||| ||||||||||||
Sbjct: 40 cgtgctctctatcgttgtca 21
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgcttgt 35
||||||||| |||||||||||||||
Sbjct: 21 tgacaacgatagagagcacgcttgt 45
>41690_vvi-MIR535c:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 10 ttgacaacgagagagagcacgcttgttagccttcatgtaaggaacatg 57
||||||||||||||||||||||| || || |||||| |||||||||
Sbjct: 10 ttgacaacgagagagagcacgctagtctgcattcatgcgaggaacatg 57
>39520_ppt-MIR535c:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgct 32
||||||||||||||||||||||
Sbjct: 2 tgacaacgagagagagcacgct 23
>39519_ppt-MIR535b:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgct 32
||||||||||||||||||||||
Sbjct: 2 tgacaacgagagagagcacgct 23
>39518_ppt-MIR535a:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgct 32
||||||||||||||||||||||
Sbjct: 27 tgacaacgagagagagcacgct 48
>42109_osa-MIR535:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgc 31
|||||||||||||||||||||
Sbjct: 6 tgacaacgagagagagcacgc 26
>41206_aqc-MIR535:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgc 31
|||||||||||||||||||||
Sbjct: 1 tgacaacgagagagagcacgc 21
>39521_ppt-MIR535d:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgc 31
|||||||||||||||||||||
Sbjct: 3 tgacaacgagagagagcacgc 23
>39387_pab-MIR535:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgc 31
|||||||||||||||||||||
Sbjct: 24 tgacaacgagagagagcacgc 44
