miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42592_sbi-MIR399d:mirbase
Length = 205
Score = 406 bits (205), Expect = e-114
Identities = 205/205 (100%)
Strand = Plus / Plus
Query: 1 gtgcaggctgaagacagttgtaggcagctctcctctggcaggcggtcatcgtcgtcgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgcaggctgaagacagttgtaggcagctctcctctggcaggcggtcatcgtcgtcgtca 60
Query: 61 tcgacggctggttctgtgttcatccggatccatcgtgcagccgtgcatgcatgcagtaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcgacggctggttctgtgttcatccggatccatcgtgcagccgtgcatgcatgcagtaat 120
Query: 121 attcggttacatgcatgcattatgcacgcacgtacgtcgtcgtcctgccaaaggagagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attcggttacatgcatgcattatgcacgcacgtacgtcgtcgtcctgccaaaggagagtt 180
Query: 181 gccctgcgactgtctccagcttcct 205
|||||||||||||||||||||||||
Sbjct: 181 gccctgcgactgtctccagcttcct 205
>42044_osa-MIR399d:mirbase
Length = 286
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 164 cctgccaaaggagagttgccctgcgactgtct 195
||||||||||||||||||||||||||||||||
Sbjct: 254 cctgccaaaggagagttgccctgcgactgtct 285
Score = 56.0 bits (28), Expect = 1e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 aagacagttgtaggcagctctcctctggcagg 42
|||||||| |||||||||||||||||||||||
Sbjct: 1 aagacagtagtaggcagctctcctctggcagg 32
>42828_zma-MIR399j:mirbase
Length = 175
Score = 54.0 bits (27), Expect = 4e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 161 cgtcctgccaaaggagagttgccctgc 187
|||||||||||||||||||||||||||
Sbjct: 149 cgtcctgccaaaggagagttgccctgc 175
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 aggcagctctcctctggcaggc 43
||||||||||||||||||||||
Sbjct: 1 aggcagctctcctctggcaggc 22
>41669_vvi-MIR399b:mirbase
Length = 117
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctgcgactg 192
||||||||||||||||||||| |||||
Sbjct: 87 tgccaaaggagagttgccctgtgactg 113
>41249_csi-MIR399d:mirbase
Length = 130
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctgcgactg 192
||||||||||||||||||||| |||||
Sbjct: 100 tgccaaaggagagttgccctgtgactg 126
>40093_ath-MIR399b:mirbase
Length = 135
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 164 cctgccaaaggagagttgccctg 186
|||||||||||||||||||||||
Sbjct: 103 cctgccaaaggagagttgccctg 125
>39885_aly-MIR399b:mirbase
Length = 154
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 164 cctgccaaaggagagttgccctg 186
|||||||||||||||||||||||
Sbjct: 104 cctgccaaaggagagttgccctg 126
>42827_zma-MIR399i:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctgc 187
||||||||||||||||||||||
Sbjct: 70 tgccaaaggagagttgccctgc 91
>42823_zma-MIR399e:mirbase
Length = 124
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 165 ctgccaaaggagagttgccctg 186
||||||||||||||||||||||
Sbjct: 84 ctgccaaaggagagttgccctg 105
>42597_sbi-MIR399i:mirbase
Length = 121
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 165 ctgccaaaggagagttgccctg 186
||||||||||||||||||||||
Sbjct: 81 ctgccaaaggagagttgccctg 102
>41670_vvi-MIR399c:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 165 ctgccaaaggagagttgccctg 186
||||||||||||||||||||||
Sbjct: 51 ctgccaaaggagagttgccctg 72
>41247_csi-MIR399b:mirbase
Length = 168
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 164 cctgccaaaggagagttgccct 185
||||||||||||||||||||||
Sbjct: 123 cctgccaaaggagagttgccct 144
>40383_rco-MIR399a:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctgcgact 191
||||||||||||||||||||| ||||
Sbjct: 68 tgccaaaggagagttgccctgtgact 93
>42050_osa-MIR399j:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 165 ctgccaaaggagagttgccct 185
|||||||||||||||||||||
Sbjct: 75 ctgccaaaggagagttgccct 95
>41676_vvi-MIR399i:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 167 gccaaaggagagttgccctgcgact 191
|||||||||||||||||||| ||||
Sbjct: 93 gccaaaggagagttgccctgtgact 117
>41192_aqc-MIR399:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 165 ctgccaaaggagagttgccct 185
|||||||||||||||||||||
Sbjct: 71 ctgccaaaggagagttgccct 91
>41154_tcc-MIR399i:mirbase
Length = 157
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctg 186
|||||||||||||||||||||
Sbjct: 117 tgccaaaggagagttgccctg 137
>41027_pvu-MIR399a:mirbase
Length = 223
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctg 186
|||||||||||||||||||||
Sbjct: 89 tgccaaaggagagttgccctg 109
>40746_mtr-MIR399p:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctg 186
|||||||||||||||||||||
Sbjct: 54 tgccaaaggagagttgccctg 74
>40742_mtr-MIR399l:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctg 186
|||||||||||||||||||||
Sbjct: 54 tgccaaaggagagttgccctg 74
>40094_ath-MIR399c:mirbase
Length = 114
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctg 186
|||||||||||||||||||||
Sbjct: 84 tgccaaaggagagttgccctg 104
>39886_aly-MIR399c:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctg 186
|||||||||||||||||||||
Sbjct: 89 tgccaaaggagagttgccctg 109
>42821_zma-MIR399c:mirbase
Length = 207
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctgcga 189
|||||||||||| |||||||||||
Sbjct: 168 tgccaaaggagaattgccctgcga 191
>42596_sbi-MIR399h:mirbase
Length = 132
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 164 cctgccaaaggagagttgccctgc 187
|||||||||||||| |||||||||
Sbjct: 91 cctgccaaaggagaattgccctgc 114
>42591_sbi-MIR399c:mirbase
Length = 130
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctgcga 189
|||||||||||| |||||||||||
Sbjct: 91 tgccaaaggagaattgccctgcga 114
>42590_sbi-MIR399b:mirbase
Length = 121
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 164 cctgccaaaggagagttgccctgc 187
||||||||||||||| ||||||||
Sbjct: 80 cctgccaaaggagagctgccctgc 103
>42589_sbi-MIR399a:mirbase
Length = 136
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctgcga 189
|||||||||||| |||||||||||
Sbjct: 97 tgccaaaggagaattgccctgcga 120
>42049_osa-MIR399i:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 164 cctgccaaaggagagttgccctgc 187
||||||||||||||| ||||||||
Sbjct: 84 cctgccaaaggagagctgccctgc 107
>42043_osa-MIR399c:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctgcga 189
|||||||||||| |||||||||||
Sbjct: 80 tgccaaaggagaattgccctgcga 103
>42041_osa-MIR399a:mirbase
Length = 149
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctgcga 189
|||||||||||| |||||||||||
Sbjct: 119 tgccaaaggagaattgccctgcga 142
>41548_sly-MIR399:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccct 185
||||||||||||||||||||
Sbjct: 51 tgccaaaggagagttgccct 70
>41456_ptc-MIR399i:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccct 185
||||||||||||||||||||
Sbjct: 79 tgccaaaggagagttgccct 98
>41146_tcc-MIR399a:mirbase
Length = 136
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 gccaaaggagagttgccctg 186
||||||||||||||||||||
Sbjct: 97 gccaaaggagagttgccctg 116
>40745_mtr-MIR399o:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 166 tgccaaaggagagttgccctgcga 189
||||||||||||| ||||||||||
Sbjct: 67 tgccaaaggagagctgccctgcga 90
