miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42593_sbi-MIR399e:mirbase
Length = 126
Score = 250 bits (126), Expect = 2e-67
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 1 acatgcggggccatgcattaccgggtgggtctcctctggcagtaacttggctggtcgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acatgcggggccatgcattaccgggtgggtctcctctggcagtaacttggctggtcgcct 60
Query: 61 ggtccatgatacctgcgtgcagacactgccaaaggagatttgcccagcaatgcagttttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtccatgatacctgcgtgcagacactgccaaaggagatttgcccagcaatgcagttttg 120
Query: 121 agtccc 126
||||||
Sbjct: 121 agtccc 126
>42045_osa-MIR399e:mirbase
Length = 118
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaatgca 114
|||||||||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagcaatgca 115
>42048_osa-MIR399h:mirbase
Length = 99
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 84 cactgccaaaggagatttgcccagcaatgcag 115
||||||||||||||| ||||||||||||||||
Sbjct: 66 cactgccaaaggagacttgcccagcaatgcag 97
>42594_sbi-MIR399f:mirbase
Length = 120
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
||||||||||||||||||||||||||
Sbjct: 80 ctgccaaaggagatttgcccagcaat 105
>42046_osa-MIR399f:mirbase
Length = 117
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
||||||||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>40737_mtr-MIR399g:mirbase
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
||||||||||||||||||||||||||
Sbjct: 78 ctgccaaaggagatttgcccagcaat 103
>40387_rco-MIR399e:mirbase
Length = 108
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
||||||||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgcccagcaat 107
>41153_tcc-MIR399h:mirbase
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 84 cactgccaaaggagatttgcccagcaat 111
|||||||||||||||||||||| |||||
Sbjct: 74 cactgccaaaggagatttgccccgcaat 101
>42047_osa-MIR399g:mirbase
Length = 119
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagc 108
|||||||||||||||||||||||
Sbjct: 88 ctgccaaaggagatttgcccagc 110
>40736_mtr-MIR399f:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagc 108
|||||||||||||||||||||||
Sbjct: 78 ctgccaaaggagatttgcccagc 100
>40735_mtr-MIR399e:mirbase
Length = 134
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagc 108
|||||||||||||||||||||||
Sbjct: 94 ctgccaaaggagatttgcccagc 116
>40731_mtr-MIR399a:mirbase
Length = 134
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagc 108
|||||||||||||||||||||||
Sbjct: 94 ctgccaaaggagatttgcccagc 116
>39892_aly-MIR399i:mirbase
Length = 127
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 85 actgccaaaggagatttgcccagcaat 111
||||||||||||||||||||| |||||
Sbjct: 90 actgccaaaggagatttgccccgcaat 116
>39890_aly-MIR399g:mirbase
Length = 157
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 85 actgccaaaggagatttgcccagcaat 111
||||||||||||||||||||| |||||
Sbjct: 109 actgccaaaggagatttgccccgcaat 135
>41674_vvi-MIR399g:mirbase
Length = 113
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 cactgccaaaggagatttgccc 105
||||||||||||||||||||||
Sbjct: 80 cactgccaaaggagatttgccc 101
>41672_vvi-MIR399e:mirbase
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
|||||||||||||||||||| |||||
Sbjct: 81 ctgccaaaggagatttgcccggcaat 106
>41448_ptc-MIR399a:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
|||||||||||||||||||| |||||
Sbjct: 90 ctgccaaaggagatttgccccgcaat 115
>41246_csi-MIR399a:mirbase
Length = 155
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
|||||||||||||||||||| |||||
Sbjct: 113 ctgccaaaggagatttgcccggcaat 138
>41149_tcc-MIR399d:mirbase
Length = 136
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
|||||||||||||||||||| |||||
Sbjct: 95 ctgccaaaggagatttgcccggcaat 120
>41148_tcc-MIR399c:mirbase
Length = 141
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
||||||| ||||||||||||||||||
Sbjct: 100 ctgccaatggagatttgcccagcaat 125
>41147_tcc-MIR399b:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
|||||||||||||||||||| |||||
Sbjct: 94 ctgccaaaggagatttgcccggcaat 119
>40384_rco-MIR399b:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
|||||||||||||||||||| |||||
Sbjct: 80 ctgccaaaggagatttgcccggcaat 105
>40095_ath-MIR399d:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
|||||||||||||||||||| |||||
Sbjct: 69 ctgccaaaggagatttgccccgcaat 94
>39887_aly-MIR399d:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
|||||||||||||||||||| |||||
Sbjct: 83 ctgccaaaggagatttgccccgcaat 108
>41450_ptc-MIR399c:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 87 tgccaaaggagatttgcccagcaat 111
||||||||||||||||||| |||||
Sbjct: 97 tgccaaaggagatttgcccggcaat 121
>41449_ptc-MIR399b:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 87 tgccaaaggagatttgcccagcaat 111
||||||||||||||||||| |||||
Sbjct: 97 tgccaaaggagatttgcccggcaat 121
>41458_ptc-MIR399k:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 86 ctgccaaaggagatttgcccagcaatgc 113
||||||||||| |||||| |||||||||
Sbjct: 31 ctgccaaaggaaatttgctcagcaatgc 4
>41452_ptc-MIR399e:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 84 cactgccaaaggagatttgcccagcaat 111
||||||||||| |||||||||| |||||
Sbjct: 82 cactgccaaagaagatttgccccgcaat 109
>41451_ptc-MIR399d:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 84 cactgccaaaggagatttgcccagcaat 111
||||||||||| |||||||||| |||||
Sbjct: 82 cactgccaaagaagatttgccccgcaat 109
>40299_bna-MIR399:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgccc 105
||||||||||||||||||||
Sbjct: 80 ctgccaaaggagatttgccc 99
>40097_ath-MIR399f:mirbase
Length = 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgccc 105
||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgccc 106
>40096_ath-MIR399e:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaatgc 113
||||||||||||||||||| |||||||
Sbjct: 78 ctgccaaaggagatttgcctcgcaatgc 105
>40092_ath-MIR399a:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgccc 105
||||||||||||||||||||
Sbjct: 92 ctgccaaaggagatttgccc 111
>39889_aly-MIR399f:mirbase
Length = 167
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgccc 105
||||||||||||||||||||
Sbjct: 111 ctgccaaaggagatttgccc 130
>39888_aly-MIR399e:mirbase
Length = 191
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaatgc 113
||||||||||||||||||| |||||||
Sbjct: 117 ctgccaaaggagatttgcctcgcaatgc 144
>39884_aly-MIR399a:mirbase
Length = 162
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgccc 105
||||||||||||||||||||
Sbjct: 112 ctgccaaaggagatttgccc 131
