miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42594_sbi-MIR399f:mirbase
Length = 120
Score = 238 bits (120), Expect = 8e-64
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1 catatgcgagtcgaggattaccgggccatttctccttgggcagagtaattgaattttact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catatgcgagtcgaggattaccgggccatttctccttgggcagagtaattgaattttact 60
Query: 61 ttgctggatccggtttgctctgccaaaggagatttgcccagcaatccacatttgtaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgctggatccggtttgctctgccaaaggagatttgcccagcaatccacatttgtaatat 120
>42046_osa-MIR399f:mirbase
Length = 117
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgcccagcaatccacat 111
||||||||||||||||||||||||||||||||||
Sbjct: 84 ctctgccaaaggagatttgcccagcaatccacat 117
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 15 ggattaccgggccatttctccttgggcagag 45
||||||||||||||| |||||||||||||||
Sbjct: 5 ggattaccgggccatgtctccttgggcagag 35
>40387_rco-MIR399e:mirbase
Length = 108
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 79 tctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||||||||||
Sbjct: 81 tctgccaaaggagatttgcccagcaat 107
>42593_sbi-MIR399e:mirbase
Length = 126
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
||||||||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>42045_osa-MIR399e:mirbase
Length = 118
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
||||||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
>40737_mtr-MIR399g:mirbase
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
||||||||||||||||||||||||||
Sbjct: 78 ctgccaaaggagatttgcccagcaat 103
>42047_osa-MIR399g:mirbase
Length = 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 tctgccaaaggagatttgcccagc 102
||||||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgcccagc 110
>41672_vvi-MIR399e:mirbase
Length = 112
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||||| |||||
Sbjct: 79 ctctgccaaaggagatttgcccggcaat 106
>41148_tcc-MIR399c:mirbase
Length = 141
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgcccagcaat 105
||||||||| ||||||||||||||||||
Sbjct: 98 ctctgccaatggagatttgcccagcaat 125
>41147_tcc-MIR399b:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||||| |||||
Sbjct: 92 ctctgccaaaggagatttgcccggcaat 119
>40736_mtr-MIR399f:mirbase
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 tctgccaaaggagatttgcccagc 102
||||||||||||||||||||||||
Sbjct: 77 tctgccaaaggagatttgcccagc 100
>40735_mtr-MIR399e:mirbase
Length = 134
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 tctgccaaaggagatttgcccagc 102
||||||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgcccagc 116
>40731_mtr-MIR399a:mirbase
Length = 134
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 tctgccaaaggagatttgcccagc 102
||||||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgcccagc 116
>40095_ath-MIR399d:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||||| |||||
Sbjct: 67 ctctgccaaaggagatttgccccgcaat 94
>39887_aly-MIR399d:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||||| |||||
Sbjct: 81 ctctgccaaaggagatttgccccgcaat 108
>41246_csi-MIR399a:mirbase
Length = 155
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 79 tctgccaaaggagatttgcccagcaat 105
||||||||||||||||||||| |||||
Sbjct: 112 tctgccaaaggagatttgcccggcaat 138
>41149_tcc-MIR399d:mirbase
Length = 136
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 79 tctgccaaaggagatttgcccagcaat 105
||||||||||||||||||||| |||||
Sbjct: 94 tctgccaaaggagatttgcccggcaat 120
>42048_osa-MIR399h:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
||||||||||||| ||||||||||||
Sbjct: 68 ctgccaaaggagacttgcccagcaat 93
>41448_ptc-MIR399a:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||| |||||
Sbjct: 90 ctgccaaaggagatttgccccgcaat 115
>41153_tcc-MIR399h:mirbase
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||| |||||
Sbjct: 76 ctgccaaaggagatttgccccgcaat 101
>40384_rco-MIR399b:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||| |||||
Sbjct: 80 ctgccaaaggagatttgcccggcaat 105
>40299_bna-MIR399:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgccc 99
||||||||||||||||||||||
Sbjct: 78 ctctgccaaaggagatttgccc 99
>40097_ath-MIR399f:mirbase
Length = 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgccc 99
||||||||||||||||||||||
Sbjct: 85 ctctgccaaaggagatttgccc 106
>39892_aly-MIR399i:mirbase
Length = 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||| |||||
Sbjct: 91 ctgccaaaggagatttgccccgcaat 116
>39890_aly-MIR399g:mirbase
Length = 157
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||| |||||
Sbjct: 110 ctgccaaaggagatttgccccgcaat 135
>39889_aly-MIR399f:mirbase
Length = 167
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgccc 99
||||||||||||||||||||||
Sbjct: 109 ctctgccaaaggagatttgccc 130
>39884_aly-MIR399a:mirbase
Length = 162
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgccc 99
||||||||||||||||||||||
Sbjct: 110 ctctgccaaaggagatttgccc 131
>41450_ptc-MIR399c:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 81 tgccaaaggagatttgcccagcaat 105
||||||||||||||||||| |||||
Sbjct: 97 tgccaaaggagatttgcccggcaat 121
>41449_ptc-MIR399b:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 81 tgccaaaggagatttgcccagcaat 105
||||||||||||||||||| |||||
Sbjct: 97 tgccaaaggagatttgcccggcaat 121
>40096_ath-MIR399e:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgcc 98
|||||||||||||||||||||
Sbjct: 76 ctctgccaaaggagatttgcc 96
>40092_ath-MIR399a:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 79 tctgccaaaggagatttgccc 99
|||||||||||||||||||||
Sbjct: 91 tctgccaaaggagatttgccc 111
>39888_aly-MIR399e:mirbase
Length = 191
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgcc 98
|||||||||||||||||||||
Sbjct: 115 ctctgccaaaggagatttgcc 135
>41674_vvi-MIR399g:mirbase
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgccc 99
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
>41668_vvi-MIR399a:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 tgctctgccaaaggagatttgccc 99
||||||||||||||||| ||||||
Sbjct: 62 tgctctgccaaaggagaattgccc 85
