miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42595_sbi-MIR399g:mirbase
Length = 125
Score = 230 bits (116), Expect = 2e-61
Identities = 122/125 (97%)
Strand = Plus / Plus
Query: 1 ccagatgtgcacttgcattgctgggcaacttctcctttggcagatgngcaatgngctcng 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct: 1 ccagatgtgcacttgcattgctgggcaacttctcctttggcagatgcgcaatgtgctccg 60
Query: 61 accctggggcttcttccgcgcctactgccaaaggaaatttgccccggaattcacctgcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accctggggcttcttccgcgcctactgccaaaggaaatttgccccggaattcacctgcac 120
Query: 121 agcca 125
|||||
Sbjct: 121 agcca 125
>42824_zma-MIR399f:mirbase
Length = 105
Score = 69.9 bits (35), Expect = 4e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 4 gatgtgcacttgcattgctgggcaacttctcctttggcagatg 46
||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 4 gatgtgcacctgcatttctgggcaacttctcctttggcagatg 46
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 85 ctgccaaaggaaatttgccccggaattcacctgcaca 121
||||||||||||||||||||||||||||| |||||||
Sbjct: 65 ctgccaaaggaaatttgccccggaattcatctgcaca 101
>42051_osa-MIR399k:mirbase
Length = 106
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 82 ctactgccaaaggaaatttgccccggaattca 113
||||||||||||||||||||||||||||||||
Sbjct: 72 ctactgccaaaggaaatttgccccggaattca 103
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 14 tgcattgctgggcaacttctcctttggcagatg 46
||||||||||||||| || ||||||||||||||
Sbjct: 4 tgcattgctgggcaagttgtcctttggcagatg 36
>39892_aly-MIR399i:mirbase
Length = 127
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 83 tactgccaaaggaaatttgccccggaattca 113
||||||||||||| |||||||||| ||||||
Sbjct: 89 tactgccaaaggagatttgccccgcaattca 119
>41153_tcc-MIR399h:mirbase
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 84 actgccaaaggaaatttgccccggaattca 113
|||||||||||| |||||||||| ||||||
Sbjct: 75 actgccaaaggagatttgccccgcaattca 104
>41448_ptc-MIR399a:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 85 ctgccaaaggaaatttgccccggaattca 113
||||||||||| |||||||||| ||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaattca 118
>40095_ath-MIR399d:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 85 ctgccaaaggaaatttgccccggaattca 113
||||||||||| |||||||||| ||||||
Sbjct: 69 ctgccaaaggagatttgccccgcaattca 97
>39890_aly-MIR399g:mirbase
Length = 157
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 83 tactgccaaaggaaatttgccccggaatt 111
||||||||||||| |||||||||| ||||
Sbjct: 108 tactgccaaaggagatttgccccgcaatt 136
>39887_aly-MIR399d:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 85 ctgccaaaggaaatttgccccggaattca 113
||||||||||| |||||||||| ||||||
Sbjct: 83 ctgccaaaggagatttgccccgcaattca 111
