miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42596_sbi-MIR399h:mirbase
Length = 132
Score = 262 bits (132), Expect = 6e-71
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 1 agtgttcagggtaagaatcacagtgcggttctcctctggcatggaggccaacatagcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgttcagggtaagaatcacagtgcggttctcctctggcatggaggccaacatagcagg 60
Query: 61 cattggagaatgcacagcgctatcgccatccctgccaaaggagaattgccctgccattcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cattggagaatgcacagcgctatcgccatccctgccaaaggagaattgccctgccattcg 120
Query: 121 gtataaccctgg 132
||||||||||||
Sbjct: 121 gtataaccctgg 132
>42819_zma-MIR399a:mirbase
Length = 123
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 8 agggtaagaatcacagtgcggttctcctctggca 41
||||| ||||||||||||||||||||||||||||
Sbjct: 8 agggtgagaatcacagtgcggttctcctctggca 41
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||||||||
Sbjct: 84 tgccaaaggagaattgccctgccattc 110
>42049_osa-MIR399i:mirbase
Length = 116
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 14 agaatcacagtgcggttctcctctggcatggagg 47
||||||||||||| ||||||||||||||||||||
Sbjct: 4 agaatcacagtgcagttctcctctggcatggagg 37
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 89 tccctgccaaaggagaattgccctgccattc 119
|||||||||||||||| |||||||||||||
Sbjct: 82 tccctgccaaaggagagctgccctgccattc 112
>41803_bdi-MIR399b:mirbase
Length = 160
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 8 agggtaagaatcacagtgcggttctcctctggcatggagg 47
||||| ||||| |||||||||||||||||||||| |||||
Sbjct: 16 agggtgagaattacagtgcggttctcctctggcacggagg 55
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||||||||
Sbjct: 110 tgccaaaggagaattgccctgccattc 136
>41802_bdi-MIR399:mirbase
Length = 100
Score = 56.0 bits (28), Expect = 7e-09
Identities = 79/96 (82%)
Strand = Plus / Plus
Query: 21 cagtgcggttctcctctggcatggaggccaacatagcaggcattggagaatgcacagcgc 80
|||||| |||||||||||||||||| || || |||||||| || | |||| || ||
Sbjct: 1 cagtgcagttctcctctggcatggatgctaatgtagcaggccctgcacaatggactatgc 60
Query: 81 tatcgccatccctgccaaaggagaattgccctgcca 116
|||| | ||||||||||||||||||| ||||||||
Sbjct: 61 tatcactgtccctgccaaaggagaattaccctgcca 96
>41675_vvi-MIR399h:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattcg 120
||||||||||||||||||||||||||||
Sbjct: 60 tgccaaaggagaattgccctgccattcg 87
>41454_ptc-MIR399g:mirbase
Length = 94
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 92 ctgccaaaggagaattgccctgccattc 119
||||||||||||||||||||||||||||
Sbjct: 64 ctgccaaaggagaattgccctgccattc 91
>41453_ptc-MIR399f:mirbase
Length = 101
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattcg 120
||||||||||||||||||||||||||||
Sbjct: 72 tgccaaaggagaattgccctgccattcg 99
>42590_sbi-MIR399b:mirbase
Length = 121
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 6 tcagggtaagaatcacagtgcggttctcctctggcatggaggc 48
||||||| ||||||||||||| | |||||||||||||| ||||
Sbjct: 5 tcagggtgagaatcacagtgcagctctcctctggcatgaaggc 47
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 89 tccctgccaaaggagaattgccctgccattc 119
|||||||||||||||| |||||||||||||
Sbjct: 78 tccctgccaaaggagagctgccctgccattc 108
>42042_osa-MIR399b:mirbase
Length = 97
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 14 agaatcacagtgcggttctcctctggcatgg 44
|||||||||||||| ||||||||||||||||
Sbjct: 4 agaatcacagtgcgattctcctctggcatgg 34
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccattc 93
>41250_csi-MIR399e:mirbase
Length = 154
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||||||||
Sbjct: 18 tgccaaaggagaattgccctgccattc 44
>41248_csi-MIR399c:mirbase
Length = 149
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||||||||
Sbjct: 109 tgccaaaggagaattgccctgccattc 135
>41152_tcc-MIR399g:mirbase
Length = 112
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||||||||
Sbjct: 72 tgccaaaggagaattgccctgccattc 98
>41150_tcc-MIR399e:mirbase
Length = 117
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 94 gccaaaggagaattgccctgccattc 119
||||||||||||||||||||||||||
Sbjct: 78 gccaaaggagaattgccctgccattc 103
>42589_sbi-MIR399a:mirbase
Length = 136
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattcg 120
|||||||||||||||||||||| |||||
Sbjct: 97 tgccaaaggagaattgccctgcgattcg 124
>42822_zma-MIR399d:mirbase
Length = 125
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 14 agaatcacagtgcggttctcctctggcatggaggc 48
|||||||||||| || |||||||||||||| ||||
Sbjct: 9 agaatcacagtgtggctctcctctggcatgaaggc 43
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattcg 120
|||||||||||| ||||||||||||||
Sbjct: 86 tgccaaaggagagctgccctgccattcg 113
>42821_zma-MIR399c:mirbase
Length = 207
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||| ||||
Sbjct: 168 tgccaaaggagaattgccctgcgattc 194
>42820_zma-MIR399b:mirbase
Length = 122
Score = 46.1 bits (23), Expect = 6e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 6 tcagggtaagaatcacagtgcggttctcctctggcatggaggc 48
||||||| |||||||||||| | |||||||||||||| ||||
Sbjct: 6 tcagggtgcgaatcacagtgcagctctcctctggcatgaaggc 48
>42598_sbi-MIR399j:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgcc 115
|||||||||||||||||||||||
Sbjct: 71 tgccaaaggagaattgccctgcc 93
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 agtgcggttctcctctggcatg 43
||||||||||||||||||||||
Sbjct: 1 agtgcggttctcctctggcatg 22
>42591_sbi-MIR399c:mirbase
Length = 130
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||| ||||
Sbjct: 91 tgccaaaggagaattgccctgcgattc 117
>42043_osa-MIR399c:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||| ||||
Sbjct: 80 tgccaaaggagaattgccctgcgattc 106
>41063_ghr-MIR399d:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||| ||||||||||||||
Sbjct: 67 tgccaaaggagatttgccctgccattc 93
>42826_zma-MIR399h:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgc 114
||||||||||||||||||||||
Sbjct: 73 tgccaaaggagaattgccctgc 94
>42041_osa-MIR399a:mirbase
Length = 149
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgc 114
||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140
>41668_vvi-MIR399a:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 ctgccaaaggagaattgccctg 113
||||||||||||||||||||||
Sbjct: 66 ctgccaaaggagaattgccctg 87
>40739_mtr-MIR399i:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccatt 118
|||||||||||| |||||||||||||
Sbjct: 65 tgccaaaggagatttgccctgccatt 90
>40738_mtr-MIR399h:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccatt 118
|||||||||||| |||||||||||||
Sbjct: 65 tgccaaaggagatttgccctgccatt 90
>40733_mtr-MIR399c:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccatt 118
|||||||||||| |||||||||||||
Sbjct: 80 tgccaaaggagatttgccctgccatt 105
>42828_zma-MIR399j:mirbase
Length = 175
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 91 cctgccaaaggagaattgccctgc 114
|||||||||||||| |||||||||
Sbjct: 152 cctgccaaaggagagttgccctgc 175
>42592_sbi-MIR399d:mirbase
Length = 205
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 91 cctgccaaaggagaattgccctgc 114
|||||||||||||| |||||||||
Sbjct: 164 cctgccaaaggagagttgccctgc 187
>42044_osa-MIR399d:mirbase
Length = 286
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 91 cctgccaaaggagaattgccctgc 114
|||||||||||||| |||||||||
Sbjct: 254 cctgccaaaggagagttgccctgc 277
