miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42597_sbi-MIR399i:mirbase
Length = 121
Score = 240 bits (121), Expect = 2e-64
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 1 atgcctaagctgtccagtttcagggcttctctttcttggcagggagcatgagaagccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcctaagctgtccagtttcagggcttctctttcttggcagggagcatgagaagccata 60
Query: 61 gctctgctctgttctgccctctgccaaaggagagttgccctgtaacaggactcagcttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctctgctctgttctgccctctgccaaaggagagttgccctgtaacaggactcagcttat 120
Query: 121 g 121
|
Sbjct: 121 g 121
>42823_zma-MIR399e:mirbase
Length = 124
Score = 176 bits (89), Expect = 2e-45
Identities = 117/124 (94%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 1 atgcctaagctgtccagtttcagggcttctctttcttggcaggga-gcatgagaagccat 59
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 1 atgcctaagctgtccagtttcagggcttctctttcttggcagggaagcatgagatgccat 60
Query: 60 agctct--gctctgttctgccctctgccaaaggagagttgccctgtaacaggactcagct 117
|||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agctctctgctctcttcaaccctctgccaaaggagagttgccctgtaacaggactcagct 120
Query: 118 tatg 121
||||
Sbjct: 121 tatg 124
>42050_osa-MIR399j:mirbase
Length = 106
Score = 63.9 bits (32), Expect = 3e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 12 gtccagtttcagggcttctctttcttggcagggagcatgagaag 55
|||||||||||||||| |||| ||||||||||||||||| ||||
Sbjct: 2 gtccagtttcagggctcctctctcttggcagggagcatgtgaag 45
>41670_vvi-MIR399c:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 80 tctgccaaaggagagttgccctgt 103
||||||||||||||||||||||||
Sbjct: 50 tctgccaaaggagagttgccctgt 73
>41146_tcc-MIR399a:mirbase
Length = 136
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 83 gccaaaggagagttgccctgtaac 106
||||||||||||||||||||||||
Sbjct: 97 gccaaaggagagttgccctgtaac 120
>41154_tcc-MIR399i:mirbase
Length = 157
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgtaacag 108
|||||||||||||||||||||| ||||
Sbjct: 117 tgccaaaggagagttgccctgtgacag 143
>39889_aly-MIR399f:mirbase
Length = 167
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 79 ctctgccaaaggagagttgccctgtaa 105
||||||||||||||| |||||||||||
Sbjct: 109 ctctgccaaaggagatttgccctgtaa 135
>42828_zma-MIR399j:mirbase
Length = 175
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagagttgccctg 102
||||||||||||||||||||||
Sbjct: 153 ctgccaaaggagagttgccctg 174
>42592_sbi-MIR399d:mirbase
Length = 205
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagagttgccctg 102
||||||||||||||||||||||
Sbjct: 165 ctgccaaaggagagttgccctg 186
>42044_osa-MIR399d:mirbase
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagagttgccctg 102
||||||||||||||||||||||
Sbjct: 255 ctgccaaaggagagttgccctg 276
>41672_vvi-MIR399e:mirbase
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 75 tgccctctgccaaaggagagttgccc 100
||||||||||||||||||| ||||||
Sbjct: 75 tgccctctgccaaaggagatttgccc 100
>41669_vvi-MIR399b:mirbase
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 87 tgccaaaggagagttgccctgt 108
>41249_csi-MIR399d:mirbase
Length = 130
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 100 tgccaaaggagagttgccctgt 121
>41247_csi-MIR399b:mirbase
Length = 168
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagagttgccctgtaac 106
||||||||||||||||||||| ||||
Sbjct: 124 ctgccaaaggagagttgccctataac 149
>41192_aqc-MIR399:mirbase
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 tctgccaaaggagagttgccct 101
||||||||||||||||||||||
Sbjct: 70 tctgccaaaggagagttgccct 91
>41147_tcc-MIR399b:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 75 tgccctctgccaaaggagagttgccc 100
||||||||||||||||||| ||||||
Sbjct: 88 tgccctctgccaaaggagatttgccc 113
>41027_pvu-MIR399a:mirbase
Length = 223
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 89 tgccaaaggagagttgccctgt 110
>40746_mtr-MIR399p:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 54 tgccaaaggagagttgccctgt 75
>40742_mtr-MIR399l:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 54 tgccaaaggagagttgccctgt 75
>40383_rco-MIR399a:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 68 tgccaaaggagagttgccctgt 89
>40094_ath-MIR399c:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 84 tgccaaaggagagttgccctgt 105
>40093_ath-MIR399b:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagagttgccctg 102
||||||||||||||||||||||
Sbjct: 104 ctgccaaaggagagttgccctg 125
>40092_ath-MIR399a:mirbase
Length = 123
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tctgccaaaggagagttgccctgtaa 105
|||||||||||||| |||||||||||
Sbjct: 91 tctgccaaaggagatttgccctgtaa 116
>39886_aly-MIR399c:mirbase
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 89 tgccaaaggagagttgccctgt 110
>39885_aly-MIR399b:mirbase
Length = 154
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagagttgccctg 102
||||||||||||||||||||||
Sbjct: 105 ctgccaaaggagagttgccctg 126
>42827_zma-MIR399i:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctg 102
|||||||||||||||||||||
Sbjct: 70 tgccaaaggagagttgccctg 90
>41676_vvi-MIR399i:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 gccaaaggagagttgccctgt 103
|||||||||||||||||||||
Sbjct: 93 gccaaaggagagttgccctgt 113
>41668_vvi-MIR399a:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 ctctgccaaaggagagttgccctgt 103
||||||||||||||| |||||||||
Sbjct: 64 ctctgccaaaggagaattgccctgt 88
>41548_sly-MIR399:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccct 101
||||||||||||||||||||
Sbjct: 51 tgccaaaggagagttgccct 70
>41459_ptc-MIR399l:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 83 gccaaaggagagttgccctgtaac 106
||||||||||||||||||| ||||
Sbjct: 82 gccaaaggagagttgccctctaac 105
>41456_ptc-MIR399i:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccct 101
||||||||||||||||||||
Sbjct: 79 tgccaaaggagagttgccct 98
