miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42598_sbi-MIR399j:mirbase
Length = 93
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 agtgcggttctcctctggcatgaacgacggctggagcagcttgccacatggctcggccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgcggttctcctctggcatgaacgacggctggagcagcttgccacatggctcggccac 60
Query: 61 ggcccttgcttgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 ggcccttgcttgccaaaggagaattgccctgcc 93
>42826_zma-MIR399h:mirbase
Length = 94
Score = 81.8 bits (41), Expect = 8e-17
Identities = 83/95 (87%), Gaps = 4/95 (4%)
Strand = Plus / Plus
Query: 1 agtgcggttctcctctggcatgaacgacggctggagcagcttgccacatggctcggccac 60
||||| |||||||||||||| |||| | ||||| ||||||||||| ||||||| | ||||
Sbjct: 1 agtgcagttctcctctggcacgaaccaaggctg-agcagcttgccccatggctagcccac 59
Query: 61 g---gcccttgcttgccaaaggagaattgccctgc 92
| |||||| ||||||||||||||||||||||||
Sbjct: 60 gacggcccttccttgccaaaggagaattgccctgc 94
>42819_zma-MIR399a:mirbase
Length = 123
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 63 cccttgcttgccaaaggagaattgccctgcc 93
||||| |||||||||||||||||||||||||
Sbjct: 76 cccttccttgccaaaggagaattgccctgcc 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 agtgcggttctcctctggca 20
||||||||||||||||||||
Sbjct: 22 agtgcggttctcctctggca 41
>41803_bdi-MIR399b:mirbase
Length = 160
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 69 cttgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||||
Sbjct: 108 cttgccaaaggagaattgccctgcc 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 agtgcggttctcctctggca 20
||||||||||||||||||||
Sbjct: 30 agtgcggttctcctctggca 49
>41675_vvi-MIR399h:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||||||||||||||
Sbjct: 59 ttgccaaaggagaattgccctgcc 82
>41453_ptc-MIR399f:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||||||||||||||
Sbjct: 71 ttgccaaaggagaattgccctgcc 94
>41250_csi-MIR399e:mirbase
Length = 154
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||||||||||||||
Sbjct: 17 ttgccaaaggagaattgccctgcc 40
>41248_csi-MIR399c:mirbase
Length = 149
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||||||||||||||
Sbjct: 108 ttgccaaaggagaattgccctgcc 131
>41152_tcc-MIR399g:mirbase
Length = 112
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||||||||||||||
Sbjct: 71 ttgccaaaggagaattgccctgcc 94
>42596_sbi-MIR399h:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||
Sbjct: 93 tgccaaaggagaattgccctgcc 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agtgcggttctcctctggcatg 22
||||||||||||||||||||||
Sbjct: 22 agtgcggttctcctctggcatg 43
>42042_osa-MIR399b:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgcc 89
>41454_ptc-MIR399g:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgcc 87
>40383_rco-MIR399a:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 cttgcttgccaaaggagaattgccctg 91
|||||||||||||||||| ||||||||
Sbjct: 62 cttgcttgccaaaggagagttgccctg 88
>42821_zma-MIR399c:mirbase
Length = 207
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgc 92
||||||||||||||||||||||
Sbjct: 168 tgccaaaggagaattgccctgc 189
>42591_sbi-MIR399c:mirbase
Length = 130
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgc 92
||||||||||||||||||||||
Sbjct: 91 tgccaaaggagaattgccctgc 112
>42589_sbi-MIR399a:mirbase
Length = 136
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgc 92
||||||||||||||||||||||
Sbjct: 97 tgccaaaggagaattgccctgc 118
>42043_osa-MIR399c:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgc 92
||||||||||||||||||||||
Sbjct: 80 tgccaaaggagaattgccctgc 101
>42041_osa-MIR399a:mirbase
Length = 149
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgc 92
||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140
>41150_tcc-MIR399e:mirbase
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 gccaaaggagaattgccctgcc 93
||||||||||||||||||||||
Sbjct: 78 gccaaaggagaattgccctgcc 99
>41668_vvi-MIR399a:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctg 91
|||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctg 87
>41063_ghr-MIR399d:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||| ||||||||||
Sbjct: 66 ttgccaaaggagatttgccctgcc 89
>40739_mtr-MIR399i:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||| ||||||||||
Sbjct: 64 ttgccaaaggagatttgccctgcc 87
>40738_mtr-MIR399h:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||| ||||||||||
Sbjct: 64 ttgccaaaggagatttgccctgcc 87
>40733_mtr-MIR399c:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||| ||||||||||
Sbjct: 79 ttgccaaaggagatttgccctgcc 102
