miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42622_sbi-MIR437w:mirbase
Length = 173
Score = 283 bits (143), Expect = 2e-77
Identities = 163/173 (94%)
Strand = Plus / Plus
Query: 1 taaatctctctaatatttaccaagtttatagaaaaatgcatcaacatttccaacatcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taaatctctctaatatttaccaagtttatagaaaaatgcatcaacatttccaacatcaaa 60
Query: 61 ttagtatcattaaattctccgtgaaatatattcatagtgcatttacttgaacttgtagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttagtatcattaaattctccgtgaaatatattcatagtgcatttacttgaacttgtagat 120
Query: 121 tttaatagnnnnnnnnnnctaaaaacttggtgaaagttagagaagtttgactt 173
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 121 tttaatagttttttttttctaaaaacttggtgaaagttagagaagtttgactt 173
>42607_sbi-MIR437g:mirbase
Length = 176
Score = 83.8 bits (42), Expect = 4e-17
Identities = 87/101 (86%), Gaps = 2/101 (1%)
Strand = Plus / Minus
Query: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaattagtatcattaaattct 78
||||||||||||||||| ||||||||||| | |||||||||| |||| ||| |||||||
Sbjct: 152 accaagtttatagaaaattgcatcaacatctacaacatcaaactagtttcaccaaattct 93
Query: 79 ccgtgaaata--tattcatagtgcatttacttgaacttgta 117
| ||||||| | || |||||||||||| |||||||||||
Sbjct: 92 ctatgaaatatgtcttgatagtgcatttatttgaacttgta 52
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 144 aaacttggtcaaagttagagaagtttgactt 174
>42631_sbi-MIR1435a:mirbase
Length = 287
Score = 69.9 bits (35), Expect = 6e-13
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaattagtatcattaaattct 78
|||||||||| ||||| |||||||||||| | ||||||||| || || ||||||||| ||
Sbjct: 222 accaagtttacagaaagatgcatcaacatctacaacatcaagtttgtttcattaaatcct 163
Query: 79 ccgtgaaatat 89
|| ||||||||
Sbjct: 162 ccatgaaatat 152
>42475_ssp-MIR437a:mirbase
Length = 175
Score = 69.9 bits (35), Expect = 6e-13
Identities = 87/102 (85%), Gaps = 3/102 (2%)
Strand = Plus / Plus
Query: 21 caagtttatagaaaaatgcatcaacatttccaacatcaaattagtatcattaaattctcc 80
|||||||||||||||||||| ||| || | || |||||| |||| |||||||||||||
Sbjct: 25 caagtttatagaaaaatgcaccaaaatctagaatatcaaactagttccattaaattctcc 84
Query: 81 gtgaaatata--ttcatagtgcatttacttgaacttgtagat 120
||||||||| || ||| |||||||| ||||||||||||||
Sbjct: 85 atgaaatatattttgataatgcattta-ttgaacttgtagat 125
>42620_sbi-MIR437u:mirbase
Length = 164
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
|||||||||||||||||||||||||||||||
Sbjct: 134 aaacttggtgaaagttagagaagtttgactt 164
Score = 52.0 bits (26), Expect = 1e-07
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaattagtatcattaaattct 78
||||||||||||||||||| | ||| || | ||||||||||||| ||||||||||||
Sbjct: 142 accaagtttatagaaaaatacgccaatatctatgacatcaaattagtttcattaaattct 83
Query: 79 cc 80
||
Sbjct: 82 cc 81
>42610_sbi-MIR437k:mirbase
Length = 172
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 139 ctaaaaacttggtgaaagttagagaagtttgactt 173
||||||||||||| |||||||||||||||||||||
Sbjct: 136 ctaaaaacttggtcaaagttagagaagtttgactt 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 147 ttggtgaaagttagagaagtttgac 171
||||| |||||||||||||||||||
Sbjct: 27 ttggtcaaagttagagaagtttgac 3
>42614_sbi-MIR437o:mirbase
Length = 175
Score = 60.0 bits (30), Expect = 6e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 24 gtttatagaaaaatgcatcaacatttccaacatcaaattagtatcattaaattctccgtg 83
|||| |||||||||||| || | | | ||||||||||||||| ||||||||||||| ||
Sbjct: 25 gtttttagaaaaatgcaccatcctctacaacatcaaattagtttcattaaattctctatg 84
Query: 84 aaatat 89
||||||
Sbjct: 85 aaatat 90
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 140 taaaaacttggtgaaagttagagaagtttgactt 173
||||||||| || |||||||||||||||||||||
Sbjct: 140 taaaaacttagtcaaagttagagaagtttgactt 173
>42621_sbi-MIR437v:mirbase
Length = 114
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 20 ccaagtttatagaaaaatgcatcaacatttccaacatcaaa 60
|||||||||||||||||||||||||||| | ||| ||||||
Sbjct: 91 ccaagtttatagaaaaatgcatcaacatctacaatatcaaa 51
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
|||||||| |||||||||||||||||||||
Sbjct: 84 aaacttggacaaagttagagaagtttgactt 114
>42602_sbi-MIR437b:mirbase
Length = 171
Score = 58.0 bits (29), Expect = 2e-09
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaatta 63
|||||||||||||||||||||| |||||| | ||||||||||||
Sbjct: 149 accaagtttatagaaaaatgcaccaacatctgaaacatcaaatta 105
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 141 aaacttggtcaaagttagagaagtttgactt 171
>42605_sbi-MIR437e:mirbase
Length = 101
Score = 56.0 bits (28), Expect = 9e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 142 aaaacttggtgaaagttagagaagtttgactt 173
|||||||||| |||||||||||||||||||||
Sbjct: 70 aaaacttggtcaaagttagagaagtttgactt 101
>42619_sbi-MIR437t:mirbase
Length = 170
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 140 aaacttggtcaaagttagagaagtttgactt 170
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 19 accaagtttatagaaaaatgca 40
||||||||||||||||||||||
Sbjct: 148 accaagtttatagaaaaatgca 127
>42615_sbi-MIR437p:mirbase
Length = 188
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 156 aaacttggtcaaagttagagaagtttgactt 186
>42613_sbi-MIR437n:mirbase
Length = 182
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 150 aaacttggttaaagttagagaagtttgactt 180
>42611_sbi-MIR437l:mirbase
Length = 170
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 139 ctaaaaacttggtgaaagttagagaagtttgactt 173
|||||||||||| |||||||||||||||||||||
Sbjct: 136 ctaaaaacttggccaaagttagagaagtttgactt 170
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 19 accaagtttatagaaaaatgcatcaaca 46
||||| |||||||||||||||| |||||
Sbjct: 21 accaaatttatagaaaaatgcaccaaca 48
>42606_sbi-MIR437f:mirbase
Length = 174
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 142 aaacttggtcaaagttagagaagtttgactt 172
Score = 46.1 bits (23), Expect = 9e-06
Identities = 49/57 (85%), Gaps = 3/57 (5%)
Strand = Plus / Minus
Query: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaattagtatcattaaat 75
||||||||||||||||| |||| ||| || ||||| ||||||||| |||||||||
Sbjct: 150 accaagtttatagaaaagtgcaccaagat---caacaacaaattagtttcattaaat 97
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 153 aaagttagagaagtttgact 172
||||||||||||||||||||
Sbjct: 20 aaagttagagaagtttgact 1
>42604_sbi-MIR437d:mirbase
Length = 136
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 104 aaacttggttaaagttagagaagtttgactt 134
Score = 52.0 bits (26), Expect = 1e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaattag 64
||||||||||||| |||||||| ||| |||| |||||||| |||||
Sbjct: 112 accaagtttataggaaaatgcaccaatatttacaacatcacattag 67
>42477_ssp-MIR437c:mirbase
Length = 177
Score = 54.0 bits (27), Expect = 4e-08
Identities = 88/106 (83%), Gaps = 3/106 (2%)
Strand = Plus / Plus
Query: 25 tttatagaaaaatgcatcaacatttccaacatcaaatt-agtatcattaaattctccgtg 83
||||| |||||||| |||||||| | ||| ||||| || | | |||| ||||||||| ||
Sbjct: 30 tttatggaaaaatgtatcaacatctacaatatcaattttattttcataaaattctccatg 89
Query: 84 aaatatat--tcatagtgcatttacttgaacttgtagattttaata 127
|||||| | | |||||||||||| | |||||||||||| ||||||
Sbjct: 90 aaatatttcttaatagtgcatttattcgaacttgtagatgttaata 135
>42063_osa-MIR437:mirbase
Length = 213
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 145 aaacttggtcaaagttagagaagtttgactt 175
>42609_sbi-MIR437j:mirbase
Length = 172
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 143 aaacttggtgaaagttagagaagtttgac 171
||||||||| |||||||||||||||||||
Sbjct: 29 aaacttggtcaaagttagagaagtttgac 1
Score = 50.1 bits (25), Expect = 6e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 141 aaaaacttggtgaaagttagagaagtttgactt 173
|||||| |||| |||||||||||||||||||||
Sbjct: 140 aaaaacatggtcaaagttagagaagtttgactt 172
>42617_sbi-MIR437r:mirbase
Length = 180
Score = 46.1 bits (23), Expect = 9e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaattagt 65
||||||| |||||||||||| | || |||| |||||||||||||||
Sbjct: 22 accaagtctatagaaaaatgtactaatatttacaacatcaaattagt 68
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
|||||||| |||||||||||||||||||||
Sbjct: 148 aaacttggccaaagttagagaagtttgactt 178
>42616_sbi-MIR437q:mirbase
Length = 160
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 147 ttggtgaaagttagagaagtttgactt 173
||||| |||||||||||||||||||||
Sbjct: 132 ttggtaaaagttagagaagtttgactt 158
>42608_sbi-MIR437i:mirbase
Length = 170
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
|||||| || |||||||||||||||||||||
Sbjct: 140 aaactttgtcaaagttagagaagtttgactt 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 143 aaacttggtgaaagttagagaagtttgac 171
||||||||| ||||||| |||||||||||
Sbjct: 29 aaacttggtcaaagttaaagaagtttgac 1
>42612_sbi-MIR437m:mirbase
Length = 174
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/37 (91%), Gaps = 2/37 (5%)
Strand = Plus / Plus
Query: 139 ctaaaaacttggtgaaa--gttagagaagtttgactt 173
||||||||||||| ||| ||||||||||||||||||
Sbjct: 136 ctaaaaacttggtcaaaaagttagagaagtttgactt 172
Score = 40.1 bits (20), Expect = 5e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 29 tagaaaaatgcatcaacatttccaacatcaaattagtatcattaaatt 76
|||||||||||| |||||| | || |||||||||| ||||||||||
Sbjct: 31 tagaaaaatgcaccaacatctagaatatcaaattagcttcattaaatt 78
>42618_sbi-MIR437s:mirbase
Length = 176
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 aaagttagagaagtttgactt 173
|||||||||||||||||||||
Sbjct: 154 aaagttagagaagtttgactt 174
>42603_sbi-MIR437c:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 aaagttagagaagtttgactt 173
|||||||||||||||||||||
Sbjct: 155 aaagttagagaagtttgactt 175
>42601_sbi-MIR437a:mirbase
Length = 190
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 aaagttagagaagtttgactt 173
|||||||||||||||||||||
Sbjct: 168 aaagttagagaagtttgactt 188
