miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42630_sbi-MIR1432:mirbase
Length = 184
Score = 365 bits (184), Expect = e-102
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 1 gataggacataggaggcgagagggacgacgagccgttggtttgtgggtgtgcgtcctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gataggacataggaggcgagagggacgacgagccgttggtttgtgggtgtgcgtcctatg 60
Query: 61 ctcaggagagatgacaccgacgtcggacggaccggtcgatccgcgccgtgtctgtccgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctcaggagagatgacaccgacgtcggacggaccggtcgatccgcgccgtgtctgtccgtc 120
Query: 121 cgaagtgggtgtcatctcgcctgaagcataggacttaccagcccagtacatctccctgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgaagtgggtgtcatctcgcctgaagcataggacttaccagcccagtacatctccctgtt 180
Query: 181 ttca 184
||||
Sbjct: 181 ttca 184
Score = 42.1 bits (21), Expect = 1e-04
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 114 gtccgtccgaagtgggtgtcatctcgcctgaagcataggac 154
|||||||||| || ||||||||||| |||| ||||||||||
Sbjct: 92 gtccgtccgacgtcggtgtcatctctcctg-agcataggac 53
Score = 42.1 bits (21), Expect = 1e-04
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 53 gtcctatgct-caggagagatgacaccgacgtcggacggac 92
|||||||||| |||| ||||||||||| || ||||||||||
Sbjct: 154 gtcctatgcttcaggcgagatgacacccacttcggacggac 114
>42836_zma-MIR1432:mirbase
Length = 89
Score = 145 bits (73), Expect = 1e-35
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 60 gctcaggagagatgacaccgacgtcggacggaccggtcgatccgcgccgtgtctgtccgt 119
||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct: 1 gctcaggagagatgacaccgacgccagacggaccggtccatccgcgccgtgtctgtccgt 60
Query: 120 ccgaagtgggtgtcatctcgcctgaagca 148
| |||||||||||||||||||||||||||
Sbjct: 61 ctgaagtgggtgtcatctcgcctgaagca 89
>42484_ssp-MIR1432:mirbase
Length = 88
Score = 119 bits (60), Expect = 8e-28
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 60 gctcaggagagatgacaccgacgtcggacggaccggtcgatccgcgccgtgtctgtccgt 119
|||||||| ||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 1 gctcaggaaagatgacaccgacatcagatggaccggtcgatccgcgccgtgtctgtccgt 60
Query: 120 ccgaagtgggtgtcatctcgcctgaagc 147
| |||||||||||||||| ||||||||
Sbjct: 61 ctgaagtgggtgtcatctttcctgaagc 88
>42216_osa-MIR1432:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 62 tcaggagagatgacaccgac 81
||||||||||||||||||||
Sbjct: 8 tcaggagagatgacaccgac 27
>42192_osa-MIR1318:mirbase
Length = 159
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 62 tcaggagagatgacaccgac 81
||||||||||||||||||||
Sbjct: 37 tcaggagagatgacaccgac 56
