miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41525_sly-MIR156a:mirbase
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgctaatttcattcaatttgggcagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcactaatgatgatatgctaatttcattcaatttgggcagcaa 60
Query: 61 aagcatctcaattcatttgtgctctctatgcttctgtcat 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagcatctcaattcatttgtgctctctatgcttctgtcat 100
>39801_aly-MIR157d:mirbase
Length = 256
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||||| ||||||||||
Sbjct: 38 tgacagaagatagagagcactaaggatgatatgc 71
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 63 gcatctcaattcatttgtgctctctatgcttctgtcat 100
||||||| |||| | |||||||||||||||||||||||
Sbjct: 175 gcatctctattcctatgtgctctctatgcttctgtcat 212
>41297_ptc-MIR156j:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| ||||||||||||
Sbjct: 11 ttgacagaagatagagagcacagatgatgatatgc 45
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 tttgtgctctctatgcttctgtcat 100
|||||||||||||||||||||||||
Sbjct: 68 tttgtgctctctatgcttctgtcat 92
>40654_mtr-MIR156g:mirbase
Length = 120
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||| ||||||| ||||||||||
Sbjct: 6 ttgacagaagatagagggcactaaggatgatatgc 40
>40652_mtr-MIR156e:mirbase
Length = 172
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| ||||||||||||
Sbjct: 6 ttgacagaagatagagagcacagatgatgatatgc 40
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 tttgtgctctctatgcttctgtcat 100
|||||||||||||||||||||||||
Sbjct: 144 tttgtgctctctatgcttctgtcat 168
>40429_gma-MIR156e:mirbase
Length = 124
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||| ||||||| ||||
Sbjct: 21 ttgacagaagatagagagcactgatgatgaaatgc 55
>40428_gma-MIR156d:mirbase
Length = 151
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| ||||||||||||
Sbjct: 21 ttgacagaagatagagagcacagatgatgatatgc 55
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 76 tttgtgctctctatgcttctgtcat 100
|||||||||||||| ||||||||||
Sbjct: 108 tttgtgctctctatacttctgtcat 132
>40395_ahy-MIR156b:mirbase
Length = 135
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| || ||||||||||
Sbjct: 23 ttgacagaagatagagagcacaaaagatgatatgc 57
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 71 attcatttgtgctctctatgcttctgtcat 100
|||| ||||||||||||| |||||||||||
Sbjct: 84 attcctttgtgctctctaagcttctgtcat 113
>40394_ahy-MIR156b:mirbase
Length = 135
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| || ||||||||||
Sbjct: 23 ttgacagaagatagagagcacaaaagatgatatgc 57
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 71 attcatttgtgctctctatgcttctgtcat 100
|||| ||||||||||||| |||||||||||
Sbjct: 84 attcctttgtgctctctaagcttctgtcat 113
>40310_bra-MIR157a:mirbase
Length = 149
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||||| ||||| ||||
Sbjct: 14 ttgacagaagatagagagcactaaggatgacatgc 48
>40304_bol-MIR157a:mirbase
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||||| ||||| ||||
Sbjct: 6 ttgacagaagatagagagcactaaggatgacatgc 40
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 tttgtgctctctatgcttctgtca 99
|||||||||||||| |||||||||
Sbjct: 78 tttgtgctctctatacttctgtca 101
>40260_bna-MIR156c:mirbase
Length = 155
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||||| ||||| ||||
Sbjct: 18 ttgacagaagatagagagcactaaggatgacatgc 52
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 tttgtgctctctatgcttctgtca 99
|||||||||||||| |||||||||
Sbjct: 114 tttgtgctctctatacttctgtca 137
>40259_bna-MIR156b:mirbase
Length = 208
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||||| ||||| ||||
Sbjct: 25 ttgacagaagatagagagcactaaggatgacatgc 59
>40012_ath-MIR157c:mirbase
Length = 217
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||||| ||||| ||||
Sbjct: 24 ttgacagaagatagagagcactaaggatgacatgc 58
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 63 gcatctcaattcatttgtgctctctatgcttctgtca 99
||||||| | || |||||||||||||| |||||||||
Sbjct: 152 gcatctctactcttttgtgctctctatacttctgtca 188
>39800_aly-MIR157c:mirbase
Length = 293
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||||| ||||| ||||
Sbjct: 55 ttgacagaagatagagagcactaaggatgacatgc 89
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 63 gcatctcaattcatttgtgctctctatgcttctgtca 99
||||||| | || |||||||||||||| |||||||||
Sbjct: 203 gcatctctactcttttgtgctctctatacttctgtca 239
>41163_aqc-MIR156b:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||| ||||||||||||
Sbjct: 1 tgacagaagatagagagcacagatgatgatatgc 34
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 tttgtgctctctatgcttctgtcat 100
|||||||||||||||||||||||||
Sbjct: 58 tttgtgctctctatgcttctgtcat 82
>40013_ath-MIR157d:mirbase
Length = 221
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||||| |||| |||||
Sbjct: 24 tgacagaagatagagagcactaaggatgctatgc 57
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 63 gcatctcaattcatttgtgctctctatgcttctgtcat 100
||||||| |||| | |||||||||||||||||||||||
Sbjct: 157 gcatctctattcctatgtgctctctatgcttctgtcat 194
>41077_gra-MIR157b:mirbase
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 tttgtgctctctatgcttctgtcat 100
|||||||||||||||||||||||||
Sbjct: 63 tttgtgctctctatgcttctgtcat 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 5 ttgacagaagatagagagcac 25
>40337_rco-MIR156h:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 tttgtgctctctatgcttctgtcat 100
|||||||||||||||||||||||||
Sbjct: 66 tttgtgctctctatgcttctgtcat 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgat 31
||||||||||||||||||||| ||||||||
Sbjct: 6 ttgacagaagatagagagcacagatgatgat 36
>41526_sly-MIR156b:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgctaatt 40
||||||||||||||||||||| ||| |||| ||||||||
Sbjct: 1 ttgacagaagatagagagcacgaataatgaggtgctaatt 40
>41162_aqc-MIR156a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 tttgtgctctctatgcttctgtca 99
||||||||||||||||||||||||
Sbjct: 56 tttgtgctctctatgcttctgtca 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcac 21
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>41569_vvi-MIR156i:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| ||||||| ||||
Sbjct: 11 ttgacagaagatagagagcacagatgatgaaatgc 45
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 76 tttgtgctctctatgcttctgtcat 100
|||||||||||||| ||||||||||
Sbjct: 67 tttgtgctctctattcttctgtcat 91
>41567_vvi-MIR156g:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgat 31
||||||||||||||||||||| ||||||||
Sbjct: 11 ttgacagaagatagagagcacagatgatgat 41
>41295_ptc-MIR156h:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||| | ||||| ||||
Sbjct: 11 ttgacagaagatagagagcactgacgatgaaatgc 45
>41294_ptc-MIR156g:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| ||||||| ||||
Sbjct: 11 ttgacagaagatagagagcacagatgatgaaatgc 45
>41084_tcc-MIR156e:mirbase
Length = 123
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| ||||||| ||||
Sbjct: 21 ttgacagaagatagagagcacagatgatgagatgc 55
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 76 tttgtgctctctatgcttctgtcat 100
|||||||||||||| ||||||||||
Sbjct: 77 tttgtgctctctattcttctgtcat 101
>40655_mtr-MIR156h:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| ||||||| ||||
Sbjct: 6 ttgacagaagatagagagcacagatgatgaaatgc 40
>40336_rco-MIR156g:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||| | ||||| ||||
Sbjct: 6 ttgacagaagatagagagcactgacgatgaaatgc 40
>40010_ath-MIR157a:mirbase
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatga 30
||||||||||||||||||||| |||||||
Sbjct: 4 ttgacagaagatagagagcacagatgatga 33
>41566_vvi-MIR156f:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagcac 31
>41527_sly-MIR156c:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>41296_ptc-MIR156i:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagcac 31
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tttgtgctctctatgcttctg 96
|||||||||||||||||||||
Sbjct: 68 tttgtgctctctatgcttctg 88
>41085_tcc-MIR156f:mirbase
Length = 124
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 21 ttgacagaagatagagagcac 41
>41076_gra-MIR157a:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 5 ttgacagaagatagagagcac 25
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 76 tttgtgctctctatgcttctgtcat 100
|||||||||| ||||||||||||||
Sbjct: 73 tttgtgctctttatgcttctgtcat 97
>40653_mtr-MIR156f:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 6 ttgacagaagatagagagcac 26
>40431_gma-MIR156g:mirbase
Length = 118
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 24 ttgacagaagatagagagcac 44
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 107 ttgacagaagatagagagcac 87
>40427_gma-MIR156c:mirbase
Length = 185
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 146 ttgacagaagatagagagcac 166
>40335_rco-MIR156f:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 6 ttgacagaagatagagagcac 26
>40011_ath-MIR157b:mirbase
Length = 132
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 19 ttgacagaagatagagagcac 39
>39799_aly-MIR157b:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 4 ttgacagaagatagagagcac 24
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 76 tttgtgctctctatgcttctgtcat 100
||||||||||||| |||||||||||
Sbjct: 70 tttgtgctctctaagcttctgtcat 94
>39798_aly-MIR157a:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 16 ttgacagaagatagagagcac 36
>39727_smo-MIR156b:mirbase
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcac 21
||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcac 31
>39416_pta-MIR156b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcac 21
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>39415_pta-MIR156a:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcac 21
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
