miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41547_sly-MIR397:mirbase
Length = 116
Score = 230 bits (116), Expect = 2e-61
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 1 cagagtacttagaaacatgattgagtgcagcgttgatgacatatttgagaagtcctgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagagtacttagaaacatgattgagtgcagcgttgatgacatatttgagaagtcctgcat 60
Query: 61 ttgggccttcctcatttttcatcaacgctaaactcgatcatgtttttaattctctg 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgggccttcctcatttttcatcaacgctaaactcgatcatgtttttaattctctg 116
>41664_vvi-MIR397a:mirbase
Length = 118
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 aaacatgattgagtgcagcgttgatga 39
|||||| ||||||||||||||||||||
Sbjct: 6 aaacatcattgagtgcagcgttgatga 32
>41244_csi-MIR397:mirbase
Length = 156
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 aaacatgattgagtgcagcgttgatga 39
|||||| ||||||||||||||||||||
Sbjct: 13 aaacatcattgagtgcagcgttgatga 39
>40380_rco-MIR397:mirbase
Length = 157
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 aaacatgattgagtgcagcgttgatga 39
|||||| ||||||||||||||||||||
Sbjct: 1 aaacatcattgagtgcagcgttgatga 27
>39880_aly-MIR397b:mirbase
Length = 131
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 aaacatgattgagtgcagcgttgatg 38
|||||| |||||||||||||||||||
Sbjct: 14 aaacatcattgagtgcagcgttgatg 39
>41442_ptc-MIR397a:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 agaaacatgattgagtgcagcgttgatga 39
|||| ||| ||||||||||||||||||||
Sbjct: 4 agaaccatcattgagtgcagcgttgatga 32
>41143_tcc-MIR397:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 acatgattgagtgcagcgttgatga 39
|||| ||||||||||||||||||||
Sbjct: 18 acatcattgagtgcagcgttgatga 42
>40298_bna-MIR397b:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 aacatgattgagtgcagcgttgatg 38
||||| |||||||||||||||||||
Sbjct: 2 aacatcattgagtgcagcgttgatg 26
>40297_bna-MIR397a:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 aacatgattgagtgcagcgttgatg 38
||||| |||||||||||||||||||
Sbjct: 2 aacatcattgagtgcagcgttgatg 26
>40087_ath-MIR397a:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 aacatgattgagtgcagcgttgatg 38
||||| |||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>39879_aly-MIR397a:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 aacatgattgagtgcagcgttgatg 38
||||| |||||||||||||||||||
Sbjct: 16 aacatcattgagtgcagcgttgatg 40
>42587_sbi-MIR397:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 3 attgagtgcagcgttgatga 22
>42038_osa-MIR397b:mirbase
Length = 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 13 attgagtgcagcgttgatga 32
>42037_osa-MIR397a:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 13 attgagtgcagcgttgatga 32
>41798_bdi-MIR397b:mirbase
Length = 292
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 34 attgagtgcagcgttgatga 53
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 180 attgagtgcagcgttgatga 199
>41797_bdi-MIR397a:mirbase
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 20 attgagtgcagcgttgatga 39
>41443_ptc-MIR397b:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 13 attgagtgcagcgttgatga 32
