miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42456_sof-MIR159e:mirbase
Length = 264
Score = 523 bits (264), Expect = e-149
Identities = 264/264 (100%)
Strand = Plus / Plus
Query: 1 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 60
Query: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 120
Query: 121 tttcgagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttcgagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgtg 180
Query: 181 gtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaaggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaaggag 240
Query: 241 ctcttgcatctgatccatccatcc 264
||||||||||||||||||||||||
Sbjct: 241 ctcttgcatctgatccatccatcc 264
>42452_sof-MIR159a:mirbase
Length = 265
Score = 462 bits (233), Expect = e-131
Identities = 259/265 (97%), Gaps = 2/265 (0%)
Strand = Plus / Plus
Query: 1 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 61
Query: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 121
Query: 121 tttcgagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgtg 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 122 tttcgagagggaggagaggagctagactctcatggtggtcgtctttgagataggcttgtg 181
Query: 181 gtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaaggag 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 182 gtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaagggag 241
Query: 241 ctcttgcat-ctgatccatccatcc 264
||| ||||| |||||||||||||||
Sbjct: 242 ctc-tgcatcctgatccatccatcc 265
>42468_ssp-MIR159a:mirbase
Length = 261
Score = 456 bits (230), Expect = e-129
Identities = 256/262 (97%), Gaps = 2/262 (0%)
Strand = Plus / Plus
Query: 3 gatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggtgg 62
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 gatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggttg 60
Query: 63 ttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtattt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtattt 120
Query: 123 tcgagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgtggt 182
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 121 tcgagagggaggagaggagctagactctcatggtggtcgtctttgagataggcttgtggt 180
Query: 183 ttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaaggagct 242
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 181 ttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaagggagct 240
Query: 243 cttgcat-ctgatccatccatc 263
| ||||| ||||||||||||||
Sbjct: 241 c-tgcatcctgatccatccatc 261
>42453_sof-MIR159b:mirbase
Length = 266
Score = 456 bits (230), Expect = e-129
Identities = 260/266 (97%), Gaps = 3/266 (1%)
Strand = Plus / Plus
Query: 1 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 61
Query: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 121
Query: 121 tttc-gagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgt 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tttcggagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgt 181
Query: 180 ggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaagga 239
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 182 ggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggga 241
Query: 240 gctcttgcat-ctgatccatccatcc 264
|||| ||||| |||| ||||||||||
Sbjct: 242 gctc-tgcatcctgaaccatccatcc 266
>42455_sof-MIR159d:mirbase
Length = 265
Score = 438 bits (221), Expect = e-123
Identities = 256/265 (96%), Gaps = 2/265 (0%)
Strand = Plus / Plus
Query: 1 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 61
Query: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 121
Query: 121 tttcgagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgtg 180
|||||||||||||||||||||||||||||||| || |||||||| ||||||| |||||||
Sbjct: 122 tttcgagagggaggagaggagctagactctcatgggggtcgtctatgagatacgcttgtg 181
Query: 181 gtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaaggag 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 182 gtttgcatgaccgatgagctgcaccgtccccttgctggccgctctttggattgaagggag 241
Query: 241 ctcttgcat-ctgatccatccatcc 264
||| ||||| |||||||||||||||
Sbjct: 242 ctc-tgcatcctgatccatccatcc 265
>42494_sbi-MIR159:mirbase
Length = 226
Score = 228 bits (115), Expect = 2e-60
Identities = 202/228 (88%), Gaps = 6/228 (2%)
Strand = Plus / Plus
Query: 18 agcggagctcctatcattccaatgaagggccgttctgaagggtggttccgctgctcgttc 77
|||| |||||||||||||||||||||||||| || | | |||||||||||||||||||||
Sbjct: 1 agcgaagctcctatcattccaatgaagggcccttttcatgggtggttccgctgctcgttc 60
Query: 78 atggttcccactatcctatctcatcatgtatgtgtgtatgtattttcgagagggaggaga 137
|||||||||||||||||||||||||||||||||||||||||| | | ||| || ||||
Sbjct: 61 atggttcccactatcctatctcatcatgtatgtgtgtatgtactctagag-ggcccgaga 119
Query: 138 ggagctagactctcacggtggtc-gtctttgagataggcttgtggtttgcatgaccgaag 196
| ||| || ||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct: 120 ag----agattcatgtggtcgtcagtctttgagataggcttgtggtttgcatgaccgagg 175
Query: 197 agctgcaccgtccccttgctggccgctctttggattgaaaggagctct 244
||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 176 agctgcaccgtccccttgctggccgctctttggattgaagggagctct 223
>42695_zma-MIR159f:mirbase
Length = 215
Score = 167 bits (84), Expect = 5e-42
Identities = 193/226 (85%), Gaps = 15/226 (6%)
Strand = Plus / Plus
Query: 21 ggagctcctatcattccaatgaagggccgttctgaagggtggttccgctgctcgttcatg 80
||||||||| |||||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct: 1 ggagctcctctcattccaatgaagggtccttccgaagggtggttccgctgctcgttcatg 60
Query: 81 gttcccactatcctatctcat-catgtatgtgtgtatgtattttcgagagggaggagagg 139
||||||||||||||||||||| ||||| || ||| | ||||||||| || || |
Sbjct: 61 gttcccactatcctatctcatccatgtttgcgtg------tcttcgagaggaagcggaag 114
Query: 140 agctagactctcacggtggtcgtc-tttgagataggcttgtggtttgcatgaccgaagag 198
||| || | ||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct: 115 ----agattc---ctgtggtcgccttttgagataggcttgtggtttgcatgaccgaggag 167
Query: 199 ctgcaccgtccccttgctggccgctctttggattgaaaggagctct 244
|||||||| |||| ||||||||||||||||||||||| ||||||||
Sbjct: 168 ctgcaccgaccccgtgctggccgctctttggattgaagggagctct 213
>42690_zma-MIR159a:mirbase
Length = 246
Score = 159 bits (80), Expect = 1e-39
Identities = 96/100 (96%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 8 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg-tggttcc 66
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 9 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 68
Query: 67 gctgctcgttcatggttcccactatcctatctcatcatgt 106
||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gctgctcgttcatggttcccactatcctatctcatcatgt 108
Score = 147 bits (74), Expect = 5e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 159 tcgtctttgagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctgg 218
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 141 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 200
Query: 219 ccgctctttggattgaaaggagctct 244
||||||||||||||||| ||||||||
Sbjct: 201 ccgctctttggattgaagggagctct 226
>41868_far-MIR159:mirbase
Length = 200
Score = 91.7 bits (46), Expect = 3e-19
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 167 gagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctt 226
||||||||| ||||| | |||||||||| |||| ||| |||||||| |||||||||||||
Sbjct: 111 gagataggcctgtggctagcatgaccgaggagccgcatcgtcccctcgctggccgctctt 170
Query: 227 tggattgaaaggagctct 244
||||||||| ||||||||
Sbjct: 171 tggattgaagggagctct 188
Score = 77.8 bits (39), Expect = 4e-15
Identities = 78/90 (86%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 8 ttggatttgaagcggagctcctatcattccaatgaagggccgttct--gaagggtggttc 65
|||| ||||| | ||||||||||||||||||||||| || | | || || ||||||| |
Sbjct: 3 ttggttttgaggtggagctcctatcattccaatgaaaggtcttgctaggaggggtggtac 62
Query: 66 cgctgctcgttcatggttcccactatccta 95
|||||||||||||||||||||||||||||
Sbjct: 63 agctgctcgttcatggttcccactatccta 92
>42700_zma-MIR159k:mirbase
Length = 200
Score = 89.7 bits (45), Expect = 1e-18
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 165 ttgagataggcttgtggtttgcatgaccgaagagctgcaccgtcccctt-gctggccgct 223
||||||| |||||||||||||||||||||| |||||||| ||||||||| | || |||||
Sbjct: 118 ttgagatgggcttgtggtttgcatgaccgaggagctgcatcgtccccttcgttgaccgct 177
Query: 224 ctttggattgaaaggagctct 244
||||||||||| ||||||||
Sbjct: 178 gtttggattgaagggagctct 198
Score = 58.0 bits (29), Expect = 4e-09
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 51 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcatca 103
||||| ||||||| | |||||||||||||||||||||| ||| |||||||||
Sbjct: 31 tctgatgggtggtacaactgctcgttcatggttcccactgtcccatctcatca 83
>42699_zma-MIR159j:mirbase
Length = 252
Score = 81.8 bits (41), Expect = 2e-16
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 165 ttgagataggcttgtggtttgcatgaccgaagagctgcaccgtcccctt-gctggccgct 223
||||||| |||||||||||||||||||||| ||||||| ||||||||| | || |||||
Sbjct: 170 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 229
Query: 224 ctttggattgaaaggagctct 244
||||||||||| ||||||||
Sbjct: 230 gtttggattgaagggagctct 250
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 51 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcatca 103
||||| ||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 83 tctgatgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 135
>42691_zma-MIR159b:mirbase
Length = 221
Score = 81.8 bits (41), Expect = 2e-16
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 165 ttgagataggcttgtggtttgcatgaccgaagagctgcaccgtcccctt-gctggccgct 223
||||||| |||||||||||||||||||||| |||||||| ||||||||| | || |||||
Sbjct: 122 ttgagatgggcttgtggtttgcatgaccgaggagctgca-cgtccccttcgttgaccgct 180
Query: 224 ctttggattgaaaggagctct 244
||||||||||| ||||||||
Sbjct: 181 gtttggattgaagggagctct 201
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 51 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcatca 103
||||| ||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 52 tctgatgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 104
>42634_tae-MIR159a:mirbase
Length = 177
Score = 79.8 bits (40), Expect = 1e-15
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 21 ggagctcctatcattccaatgaagggccgttctgaagggtg-gttccgctgctcgttcat 79
|||||||||||||||||||||||||| | | ||||||| || | |||||||||||||
Sbjct: 3 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgctcgttcat 62
Query: 80 ggttcccactatcctatctc 99
||||||||||||||||||||
Sbjct: 63 ggttcccactatcctatctc 82
Score = 60.0 bits (30), Expect = 9e-10
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 167 gagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctt 226
|||| |||| |||||||||||||||||| |||| || || |||| |||| ||||| ||
Sbjct: 96 gagagaggcctgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 227 tggattgaaaggagctct 244
||||||||| ||||||||
Sbjct: 156 tggattgaagggagctct 173
>42698_zma-MIR159i:mirbase
Length = 252
Score = 73.8 bits (37), Expect = 6e-14
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 165 ttgagataggcttgtggtttgcatgaccgaagagctgcaccgtcccctt-gctggccgct 223
||||||| |||||||||||||||||||||| ||||||| ||||||||| | || |||||
Sbjct: 170 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 229
Query: 224 ctttggattgaaaggagctct 244
|||||| |||| ||||||||
Sbjct: 230 gtttggagtgaagggagctct 250
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 51 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcatca 103
||||| ||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 83 tctgatgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 135
>42697_zma-MIR159h:mirbase
Length = 200
Score = 73.8 bits (37), Expect = 6e-14
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 165 ttgagataggcttgtggtttgcatgaccgaagagctgcaccgtcccctt-gctggccgct 223
||||||| |||||||||||||||||||||| ||||||| ||||||||| | || |||||
Sbjct: 118 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 177
Query: 224 ctttggattgaaaggagctct 244
|||||| |||| ||||||||
Sbjct: 178 gtttggagtgaagggagctct 198
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 51 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcatca 103
||||| ||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 31 tctgatgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 83
>41882_hvu-MIR159a:mirbase
Length = 178
Score = 71.9 bits (36), Expect = 2e-13
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 21 ggagctcctatcattccaatgaagggccgttctgaagggtg-gttccgctgctcgttcat 79
|||||||||||||||||||||||||| | | ||||||| || | |||||| ||||||
Sbjct: 4 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgcttgttcat 63
Query: 80 ggttcccactatcctatctc 99
||||||||||||||||||||
Sbjct: 64 ggttcccactatcctatctc 83
Score = 67.9 bits (34), Expect = 4e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 167 gagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctt 226
|||||||||||||||||||||||| ||| |||| || || |||| |||| ||||| ||
Sbjct: 98 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 157
Query: 227 tggattgaaaggagctct 244
||||||||| ||||||||
Sbjct: 158 tggattgaagggagctct 175
>41918_osa-MIR159b:mirbase
Length = 188
Score = 69.9 bits (35), Expect = 9e-13
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 15 tgaagcggagctcctatcattccaatgaagggccgttctgaagggtggttccgctgctcg 74
||||| ||||||||| || |||||||||| || ||||||||||| | | |||||| |
Sbjct: 6 tgaagtggagctcctttcgttccaatgaaaggtttatctgaagggtgatacagctgcttg 65
Query: 75 ttcatggttcccactatcctatctcat 101
||||||||||||||||| |||||||||
Sbjct: 66 ttcatggttcccactattctatctcat 92
Score = 67.9 bits (34), Expect = 4e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 167 gagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctt 226
|||||||||||||||||||||||||| | |||| | | | | |||||||| || |||||
Sbjct: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
Query: 227 tggattgaaaggagctct 244
||||||||| ||||||||
Sbjct: 160 tggattgaagggagctct 177
>42696_zma-MIR159g:mirbase
Length = 252
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 51 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcatca 103
||||| ||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 83 tctgatgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 135
Score = 65.9 bits (33), Expect = 1e-11
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 165 ttgagataggcttgtggtttgcatgaccgaagagctgcaccgtcccctt 213
||||||| |||||||||||||||||||||| ||||||| |||||||||
Sbjct: 170 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtcccctt 218
