miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42463_sof-MIR408b:mirbase
Length = 286
Score = 567 bits (286), Expect = e-162
Identities = 286/286 (100%)
Strand = Plus / Plus
Query: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatggggccatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatggggccatcaacaa 60
Query: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
Query: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
Query: 181 gtggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgctt 240
Query: 241 cctcccctgcactgcctcttccctggctccccaccgttgcccttgc 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cctcccctgcactgcctcttccctggctccccaccgttgcccttgc 286
>42464_sof-MIR408c:mirbase
Length = 286
Score = 559 bits (282), Expect = e-160
Identities = 285/286 (99%)
Strand = Plus / Plus
Query: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatggggccatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatggggccatcaacaa 60
Query: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 aatttccaatttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaa 120
Query: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
Query: 181 gtggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgctt 240
Query: 241 cctcccctgcactgcctcttccctggctccccaccgttgcccttgc 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cctcccctgcactgcctcttccctggctccccaccgttgcccttgc 286
>42462_sof-MIR408a:mirbase
Length = 283
Score = 515 bits (260), Expect = e-147
Identities = 280/286 (97%), Gaps = 3/286 (1%)
Strand = Plus / Plus
Query: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatggggccatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
Query: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 aatttccaatttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaa 120
Query: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
Query: 181 gtggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgctt 240
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 181 gtggtgatggcctgacctgagacggctgagagctcagctggtgtcc---tgttgttgctt 237
Query: 241 cctcccctgcactgcctcttccctggctccccaccgttgcccttgc 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cctcccctgcactgcctcttccctggctccccaccgttgcccttgc 283
>42466_sof-MIR408e:mirbase
Length = 283
Score = 492 bits (248), Expect = e-140
Identities = 277/286 (96%), Gaps = 3/286 (1%)
Strand = Plus / Plus
Query: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatggggccatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
Query: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
Query: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
Query: 181 gtggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgctt 240
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 181 gtggtgatggcctgacctgagacggatgagagctcagctggtgtcc---tgttgttgctt 237
Query: 241 cctcccctgcactgcctcttccctggctccccaccgttgcccttgc 286
|| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 238 acttccctgcactgactcttccctggctccccaccgttgcccttgc 283
>42473_ssp-MIR408a:mirbase
Length = 248
Score = 446 bits (225), Expect = e-126
Identities = 245/251 (97%), Gaps = 3/251 (1%)
Strand = Plus / Plus
Query: 19 gagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaatttctgtcc 78
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaatttctgtcc 60
Query: 79 tccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggatttgtgaga 138
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 tccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggatttgtgaga 120
Query: 139 gttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatggcctgacct 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatggcctgacct 180
Query: 199 gagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgcactgcctc 258
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 181 gagacggctgagagctcagctggtgtcc---tgttgttgcttcctcccctgcactgcctc 237
Query: 259 ttccctggctc 269
|||||||||||
Sbjct: 238 ttccctggctc 248
>42465_sof-MIR408d:mirbase
Length = 215
Score = 200 bits (101), Expect = 4e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 182 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 170
Query: 242 ctcccctgcactgcctcttccctggctccccaccgttgcccttgc 286
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 cacccctgcactgcctcttccctggctccccaccgttgcccttgc 215
Score = 107 bits (54), Expect = 5e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 16 ttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104 gtttgcttgctcacaaaacg 123
||||||||||||||||||||
Sbjct: 75 gtttgcttgctcacaaaacg 94
>42474_ssp-MIR408d:mirbase
Length = 180
Score = 167 bits (84), Expect = 6e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 182 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 152
Query: 242 ctcccctgcactgcctcttccctggctc 269
| ||||||||||||||||||||||||||
Sbjct: 153 cacccctgcactgcctcttccctggctc 180
Score = 101 bits (51), Expect = 3e-22
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 19 gagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 55
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104 gtttgcttgctcacaaaacg 123
||||||||||||||||||||
Sbjct: 57 gtttgcttgctcacaaaacg 76
>42600_sbi-MIR408:mirbase
Length = 205
Score = 127 bits (64), Expect = 5e-30
Identities = 96/109 (88%), Gaps = 12/109 (11%)
Strand = Plus / Plus
Query: 160 agaaggtgcctccctggtgaagtggtgatggcctgacctgagagggctgagagctcagct 219
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 109 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 156
Query: 220 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 268
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
Score = 73.8 bits (37), Expect = 7e-14
Identities = 51/55 (92%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 22 acagggatgaggcagagcatgggatggggccat---caacaaaatttccaatttc 73
||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
>42829_zma-MIR408:mirbase
Length = 191
Score = 83.8 bits (42), Expect = 7e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 16 ttggagacagggatgaggcagagcatgggatggggccatcaacaaa 61
||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgagacagagcatgggatggggccatcaacaaa 61
Score = 75.8 bits (38), Expect = 2e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 229 gtgttgttgcttcctcccctgcactgcctcttccctggctcc 270
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 134 gtgttgttgctccctcccctgcactgcctcttccctggctcc 175
>42052_osa-MIR408:mirbase
Length = 213
Score = 77.8 bits (39), Expect = 4e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 230 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 272
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcccc 178
Score = 75.8 bits (38), Expect = 2e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 18 ggagacagggatgaggcagagcatgggatggggccatcaaca 59
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 26 ggagacagggatgaggcagagcatgggatggggctatcaaca 67
>42830_zma-MIR408b:mirbase
Length = 147
Score = 69.9 bits (35), Expect = 1e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 231 gttgttgcttcctcccctgcactgcctcttccctggctc 269
||||||||| |||||||||||||||||||||||||||||
Sbjct: 109 gttgttgctccctcccctgcactgcctcttccctggctc 147
Score = 50.1 bits (25), Expect = 1e-06
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 21 gacagggatgaggcagagcatggg-atggggccatcaacaaaatt 64
|||||||| ||||||||||||||| | ||||||||||||| ||||
Sbjct: 1 gacagggacgaggcagagcatgggtagggggccatcaacagaatt 45
>42647_tae-MIR408:mirbase
Length = 187
Score = 61.9 bits (31), Expect = 3e-10
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 230 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 272
|||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 120 tgttgttgctccctccc-tgcactgcctcttccctggctcccc 161
Score = 48.1 bits (24), Expect = 4e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 18 ggagacagggatgaggcagagcatgggatggggccatcaacaaaattt 65
||||||||||||| |||||||| |||||| ||| | |||||||||||
Sbjct: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaaattt 71
>41252_csi-MIR408:mirbase
Length = 153
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 240 tcctcccctgcactgcctcttccctggctc 269
||||||| ||||||||||||||||||||||
Sbjct: 113 tcctcccatgcactgcctcttccctggctc 142
>40391_rco-MIR408:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 1e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 244 cccctgcactgcctcttccctggct 268
|||||||||||||||||||||||||
Sbjct: 64 cccctgcactgcctcttccctggct 88
>40108_ath-MIR408:mirbase
Length = 218
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 248 tgcactgcctcttccctggctccc 271
||||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctccc 144
>39897_aly-MIR408:mirbase
Length = 211
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 248 tgcactgcctcttccctggctccc 271
||||||||||||||||||||||||
Sbjct: 118 tgcactgcctcttccctggctccc 141
>41683_vvi-MIR408:mirbase
Length = 107
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 248 tgcactgcctcttccctggctc 269
||||||||||||||||||||||
Sbjct: 78 tgcactgcctcttccctggctc 99
>40405_ahy-MIR408:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 248 tgcactgcctcttccctggctc 269
||||||||||||||||||||||
Sbjct: 82 tgcactgcctcttccctggctc 103
>40404_ahy-MIR408:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 248 tgcactgcctcttccctggctc 269
||||||||||||||||||||||
Sbjct: 82 tgcactgcctcttccctggctc 103
>39428_pta-MIR408:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 248 tgcactgcctcttccctggctc 269
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>41463_ptc-MIR408:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 248 tgcactgcctcttccctggct 268
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>41193_aqc-MIR408:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 248 tgcactgcctcttccctggct 268
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
Score = 40.1 bits (20), Expect = 0.001
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 20 agacagggatgaggcagagcatgg 43
||||| ||||||||||||||||||
Sbjct: 85 agacaaggatgaggcagagcatgg 62
>39742_smo-MIR408:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 248 tgcactgcctcttccctggct 268
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>39490_ppt-MIR408b:mirbase
Length = 144
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 248 tgcactgcctcttccctggct 268
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
