miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42466_sof-MIR408e:mirbase
Length = 283
Score = 561 bits (283), Expect = e-160
Identities = 283/283 (100%)
Strand = Plus / Plus
Query: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
Query: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
Query: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
Query: 181 gtggtgatggcctgacctgagacggatgagagctcagctggtgtcctgttgttgcttact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtggtgatggcctgacctgagacggatgagagctcagctggtgtcctgttgttgcttact 240
Query: 241 tccctgcactgactcttccctggctccccaccgttgcccttgc 283
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tccctgcactgactcttccctggctccccaccgttgcccttgc 283
>42462_sof-MIR408a:mirbase
Length = 283
Score = 521 bits (263), Expect = e-149
Identities = 278/283 (98%)
Strand = Plus / Plus
Query: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
Query: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 aatttccaatttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaa 120
Query: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
Query: 181 gtggtgatggcctgacctgagacggatgagagctcagctggtgtcctgttgttgcttact 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 181 gtggtgatggcctgacctgagacggctgagagctcagctggtgtcctgttgttgcttcct 240
Query: 241 tccctgcactgactcttccctggctccccaccgttgcccttgc 283
|||||||||| |||||||||||||||||||||||||||||||
Sbjct: 241 cccctgcactgcctcttccctggctccccaccgttgcccttgc 283
>42463_sof-MIR408b:mirbase
Length = 286
Score = 492 bits (248), Expect = e-140
Identities = 277/286 (96%), Gaps = 3/286 (1%)
Strand = Plus / Plus
Query: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatggggccatcaacaa 60
Query: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
Query: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
Query: 181 gtggtgatggcctgacctgagacggatgagagctcagctggtgtcc---tgttgttgctt 237
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 181 gtggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgctt 240
Query: 238 acttccctgcactgactcttccctggctccccaccgttgcccttgc 283
|| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 241 cctcccctgcactgcctcttccctggctccccaccgttgcccttgc 286
>42464_sof-MIR408c:mirbase
Length = 286
Score = 484 bits (244), Expect = e-137
Identities = 276/286 (96%), Gaps = 3/286 (1%)
Strand = Plus / Plus
Query: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatggggccatcaacaa 60
Query: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 aatttccaatttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaa 120
Query: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
Query: 181 gtggtgatggcctgacctgagacggatgagagctcagctggtgtcc---tgttgttgctt 237
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 181 gtggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgctt 240
Query: 238 acttccctgcactgactcttccctggctccccaccgttgcccttgc 283
|| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 241 cctcccctgcactgcctcttccctggctccccaccgttgcccttgc 286
>42473_ssp-MIR408a:mirbase
Length = 248
Score = 452 bits (228), Expect = e-128
Identities = 243/248 (97%)
Strand = Plus / Plus
Query: 19 gagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaatttctgtcc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaatttctgtcc 60
Query: 79 tccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggatttgtgaga 138
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 tccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggatttgtgaga 120
Query: 139 gttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatggcctgacct 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatggcctgacct 180
Query: 199 gagacggatgagagctcagctggtgtcctgttgttgcttacttccctgcactgactcttc 258
||||||| ||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 181 gagacggctgagagctcagctggtgtcctgttgttgcttcctcccctgcactgcctcttc 240
Query: 259 cctggctc 266
||||||||
Sbjct: 241 cctggctc 248
>42465_sof-MIR408d:mirbase
Length = 215
Score = 133 bits (67), Expect = 8e-32
Identities = 96/105 (91%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 182 tggtgatggcctgacctgagacggatgagagctcagctggtgtcc---tgttgttgctta 238
||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 111 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 170
Query: 239 cttccctgcactgactcttccctggctccccaccgttgcccttgc 283
| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 171 cacccctgcactgcctcttccctggctccccaccgttgcccttgc 215
Score = 99.6 bits (50), Expect = 1e-21
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaatttc 73
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104 gtttgcttgctcacaaaacg 123
||||||||||||||||||||
Sbjct: 75 gtttgcttgctcacaaaacg 94
>42474_ssp-MIR408d:mirbase
Length = 180
Score = 99.6 bits (50), Expect = 1e-21
Identities = 79/88 (89%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 182 tggtgatggcctgacctgagacggatgagagctcagctggtgtcc---tgttgttgctta 238
||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 93 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 152
Query: 239 cttccctgcactgactcttccctggctc 266
| |||||||||| ||||||||||||||
Sbjct: 153 cacccctgcactgcctcttccctggctc 180
Score = 93.7 bits (47), Expect = 7e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 19 gagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaatttc 73
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 gagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 55
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104 gtttgcttgctcacaaaacg 123
||||||||||||||||||||
Sbjct: 57 gtttgcttgctcacaaaacg 76
>42829_zma-MIR408:mirbase
Length = 191
Score = 75.8 bits (38), Expect = 2e-14
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaa 61
||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 16 ttggagacagggatgagacagagcatgggatggggccatcaacaaa 61
Score = 50.1 bits (25), Expect = 9e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 227 tgttgttgcttacttccctgcactgactcttccctggctcc 267
|||||||||| || |||||||||| |||||||||||||||
Sbjct: 135 tgttgttgctccctcccctgcactgcctcttccctggctcc 175
>42600_sbi-MIR408:mirbase
Length = 205
Score = 75.8 bits (38), Expect = 2e-14
Identities = 90/109 (82%), Gaps = 15/109 (13%)
Strand = Plus / Plus
Query: 160 agaaggtgcctccctggtgaagtggtgatggcctgacctgagacggatgagagctcagct 219
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 109 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 156
Query: 220 ggtgtcctg---ttgttgcttacttccctgcactgactcttccctggct 265
||||||||| ||||||||| || |||||||||| |||||||||||||
Sbjct: 157 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
Score = 65.9 bits (33), Expect = 2e-11
Identities = 50/55 (90%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 22 acagggatgaggcagagcatgggatgaggccat---caacaaaatttccaatttc 73
||||||| |||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
>42052_osa-MIR408:mirbase
Length = 213
Score = 67.9 bits (34), Expect = 4e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 18 ggagacagggatgaggcagagcatgggatgaggccatcaaca 59
|||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 26 ggagacagggatgaggcagagcatgggatggggctatcaaca 67
Score = 54.0 bits (27), Expect = 6e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 227 tgttgttgcttacttccctgcactgactcttccctggctcccc 269
|||||||||| || |||||||||| |||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcccc 178
>42647_tae-MIR408:mirbase
Length = 187
Score = 56.0 bits (28), Expect = 2e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 18 ggagacagggatgaggcagagcatgggatgaggccatcaacaaaattt 65
||||||||||||| |||||||| |||||||||| | |||||||||||
Sbjct: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaaattt 71
Score = 50.1 bits (25), Expect = 9e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 241 tccctgcactgactcttccctggctcccc 269
||||||||||| |||||||||||||||||
Sbjct: 133 tccctgcactgcctcttccctggctcccc 161
>42830_zma-MIR408b:mirbase
Length = 147
Score = 46.1 bits (23), Expect = 1e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 228 gttgttgcttacttccctgcactgactcttccctggctc 266
||||||||| || |||||||||| ||||||||||||||
Sbjct: 109 gttgttgctccctcccctgcactgcctcttccctggctc 147
Score = 42.1 bits (21), Expect = 2e-04
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 21 gacagggatgaggcagagcatggg-atgaggccatcaacaaaatt 64
|||||||| ||||||||||||||| | | ||||||||||| ||||
Sbjct: 1 gacagggacgaggcagagcatgggtagggggccatcaacagaatt 45
>41193_aqc-MIR408:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 20 agacagggatgaggcagagcatgggatga 48
||||| |||||||||||||||||| ||||
Sbjct: 85 agacaaggatgaggcagagcatggaatga 57
>40391_rco-MIR408:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 0.001
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 242 ccctgcactgactcttccctggct 265
|||||||||| |||||||||||||
Sbjct: 65 ccctgcactgcctcttccctggct 88
>40108_ath-MIR408:mirbase
Length = 218
Score = 40.1 bits (20), Expect = 0.001
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 245 tgcactgactcttccctggctccc 268
||||||| ||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctccc 144
>39897_aly-MIR408:mirbase
Length = 211
Score = 40.1 bits (20), Expect = 0.001
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 245 tgcactgactcttccctggctccc 268
||||||| ||||||||||||||||
Sbjct: 118 tgcactgcctcttccctggctccc 141
