miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42642_tae-MIR319:mirbase
Length = 211
Score = 389 bits (196), Expect = e-109
Identities = 196/196 (100%)
Strand = Plus / Plus
Query: 1 gggagctcacttcagtccactcatgggaggtagcggggattgaacgagctgccgactcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gggagctcacttcagtccactcatgggaggtagcggggattgaacgagctgccgactcat 67
Query: 61 tcactcgagcacacagtagatatgagactagtccagggcataccagtatgttacaatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 tcactcgagcacacagtagatatgagactagtccagggcataccagtatgttacaatatg 127
Query: 121 tactgtgcgaatgagcgaatgcagcgggagattgttctctctttcctcctccatgcttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tactgtgcgaatgagcgaatgcagcgggagattgttctctctttcctcctccatgcttgg 187
Query: 181 actgaagggagctccc 196
||||||||||||||||
Sbjct: 188 actgaagggagctccc 203
>41770_bdi-MIR319:mirbase
Length = 280
Score = 168 bits (85), Expect = 1e-42
Identities = 180/212 (84%), Gaps = 16/212 (7%)
Strand = Plus / Plus
Query: 1 gggagctcacttcagtccactcatgggaggtagcggggattgaacgagctgccgactcat 60
||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 34 gggagctttcttctgtccacccatgggaggtagcggggattgaacgagctgccgactcat 93
Query: 61 tcactcgagcacacagtagata--------tg-agactagtccagggcata-------cc 104
|||||||| |||||||| |||| || |||||| |||| |||||| |
Sbjct: 94 tcactcgaacacacagtggataactggatatgcagactaatccaaggcataatatctact 153
Query: 105 agtatgttacaatatgtactgtgcgaatgagcgaatgcagcgggagattgttctctcttt 164
||| || | ||||| ||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 154 agtgtggaataatatctactgtgtgaatgagcgaatgaagcgggagattgttctctcttt 213
Query: 165 cctcctccatgcttggactgaagggagctccc 196
||||||||||||||||||||||||||||||||
Sbjct: 214 cctcctccatgcttggactgaagggagctccc 245
>40070_ath-MIR319b:mirbase
Length = 172
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 173 atgcttggactgaagggagctccc 196
||||||||||||||||||||||||
Sbjct: 148 atgcttggactgaagggagctccc 171
>39859_aly-MIR319b:mirbase
Length = 246
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 173 atgcttggactgaagggagctccc 196
||||||||||||||||||||||||
Sbjct: 187 atgcttggactgaagggagctccc 210
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 174 tgcttggactgaagggagctccc 196
|||||||||||||||||||||||
Sbjct: 159 tgcttggactgaagggagctccc 181
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 174 tgcttggactgaagggagctccc 196
|||||||||||||||||||||||
Sbjct: 148 tgcttggactgaagggagctccc 170
Score = 44.1 bits (22), Expect = 4e-05
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 10 cttcagtccactcatgggaggtagcggggattgaacgagctgccgactcattca 63
|||||||||||||||||| || || || |||||| |||||||||||||||||
Sbjct: 20 cttcagtccactcatgggtggcagtagg-attgaattagctgccgactcattca 72
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 174 tgcttggactgaagggagctccc 196
|||||||||||||||||||||||
Sbjct: 162 tgcttggactgaagggagctccc 184
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 174 tgcttggactgaagggagctccc 196
|||||||||||||||||||||||
Sbjct: 165 tgcttggactgaagggagctccc 187
>41282_ctr-MIR319:mirbase
Length = 186
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 174 tgcttggactgaagggagctccc 196
|||||||||||||||||||||||
Sbjct: 154 tgcttggactgaagggagctccc 176
>40703_mtr-MIR319:mirbase
Length = 207
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 174 tgcttggactgaagggagctccc 196
|||||||||||||||||||||||
Sbjct: 166 tgcttggactgaagggagctccc 188
>40369_rco-MIR319c:mirbase
Length = 188
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 174 tgcttggactgaagggagctccc 196
|||||||||||||||||||||||
Sbjct: 160 tgcttggactgaagggagctccc 182
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3 gagctcacttcagtccactcatggg 27
|||||| ||||||||||||||||||
Sbjct: 7 gagctctcttcagtccactcatggg 31
>41410_ptc-MIR319g:mirbase
Length = 204
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 174 tgcttggactgaagggagctcc 195
||||||||||||||||||||||
Sbjct: 173 tgcttggactgaagggagctcc 194
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 40 ttgaacgagctgccgactcattcactcgagcac 72
|||||| ||||||||||||||||| || |||||
Sbjct: 52 ttgaactagctgccgactcattcattcaagcac 84
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 174 tgcttggactgaagggagctcc 195
||||||||||||||||||||||
Sbjct: 171 tgcttggactgaagggagctcc 192
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 44.1 bits (22), Expect = 4e-05
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 10 cttcagtccactcatgggaggtagcggggattgaacgagctgccgactcattca 63
|||||||||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 20 cttcagtccactcatgggtggtag-taggatttaattagctgccgactcattca 72
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 cttggactgaagggagctccc 196
|||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccc 179
>41635_vvi-MIR319b:mirbase
Length = 194
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 cttggactgaagggagctccc 196
|||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctccc 182
>41185_aqc-MIR319:mirbase
Length = 177
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 cttggactgaagggagctccc 196
|||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctccc 174
>41026_pvu-MIR319c:mirbase
Length = 734
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 175 gcttggactgaagggagctcc 195
|||||||||||||||||||||
Sbjct: 408 gcttggactgaagggagctcc 428
>40704_mtr-MIR319b:mirbase
Length = 180
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 cttggactgaagggagctccc 196
|||||||||||||||||||||
Sbjct: 155 cttggactgaagggagctccc 175
>40465_gma-MIR319b:mirbase
Length = 208
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 cttggactgaagggagctccc 196
|||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctccc 189
>40464_gma-MIR319a:mirbase
Length = 207
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 cttggactgaagggagctccc 196
|||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctccc 188
>40368_rco-MIR319b:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 cttggactgaagggagctccc 196
|||||||||||||||||||||
Sbjct: 153 cttggactgaagggagctccc 173
>40367_rco-MIR319a:mirbase
Length = 211
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 cttggactgaagggagctccc 196
|||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctccc 205
>39740_smo-MIR319:mirbase
Length = 215
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 cttggactgaagggagctccc 196
|||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctccc 205
>39484_ppt-MIR319e:mirbase
Length = 174
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 cttggactgaagggagctccc 196
|||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctccc 167
>39483_ppt-MIR319d:mirbase
Length = 170
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 cttggactgaagggagctccc 196
|||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctccc 165
>39482_ppt-MIR319c:mirbase
Length = 189
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 cttggactgaagggagctccc 196
|||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctccc 174
>41639_vvi-MIR319g:mirbase
Length = 222
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 177 ttggactgaagggagctccc 196
||||||||||||||||||||
Sbjct: 192 ttggactgaagggagctccc 211
>41544_sly-MIR319:mirbase
Length = 168
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 176 cttggactgaagggagctcc 195
||||||||||||||||||||
Sbjct: 149 cttggactgaagggagctcc 168
>41405_ptc-MIR319b:mirbase
Length = 185
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 177 ttggactgaagggagctccc 196
||||||||||||||||||||
Sbjct: 157 ttggactgaagggagctccc 176
>40069_ath-MIR319a:mirbase
Length = 176
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 177 ttggactgaagggagctccc 196
||||||||||||||||||||
Sbjct: 154 ttggactgaagggagctccc 173
>39858_aly-MIR319a:mirbase
Length = 221
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 177 ttggactgaagggagctccc 196
||||||||||||||||||||
Sbjct: 177 ttggactgaagggagctccc 196
>39481_ppt-MIR319b:mirbase
Length = 160
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 176 cttggactgaagggagctcc 195
||||||||||||||||||||
Sbjct: 140 cttggactgaagggagctcc 159
>39480_ppt-MIR319a:mirbase
Length = 169
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 176 cttggactgaagggagctcc 195
||||||||||||||||||||
Sbjct: 148 cttggactgaagggagctcc 167
