miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42652_tae-MIR1119:mirbase
Length = 176
Score = 327 bits (165), Expect = 2e-90
Identities = 175/177 (98%), Gaps = 1/177 (0%)
Strand = Plus / Plus
Query: 1 agcgtcagcgtgtgatgcgccagcgcgcgcggaggaggagctggctgggtcagcgtcgac 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agcgtcagcgtgtgaggcgccagcgcgcgcggaggaggagctggctgggtcagcgtcgac 60
Query: 61 ggcggcggccgtgtgctcctacgtggcacggcgtgatgctgagtcagccagtggagtggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggcggcggccgtgtgctcctacgtggcacggcgtgatgctgagtcagccagtggagtggt 120
Query: 121 gctactttttactaggtgtggagtggggagtgctatgcgcggggtcgcgtgacgtgg 177
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 121 gctactttttactaggtgtggagt-gggagtgctatgcgcggggtcgcgtgacgtgg 176
>41878_far-MIR1119:mirbase
Length = 146
Score = 67.9 bits (34), Expect = 2e-12
Identities = 55/61 (90%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 71 gtgtgctcctacgtggcacggcgtgatgctgagtcagccagtggagtg--gtgctacttt 128
|||| ||||||||||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct: 86 gtgtactcctacgtggcacggcgtgatgcttagtcagccagcagagtggagtgctacttt 145
Query: 129 t 129
|
Sbjct: 146 t 146
