miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42653_tae-MIR1120:mirbase
Length = 119
Score = 236 bits (119), Expect = 3e-63
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtactccctccgtcccataatataagaacatttttgacagtgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcggccgcccgggcaggtactccctccgtcccataatataagaacatttttgacagtgta 60
Query: 61 gtgtcaaaaacattcttatattatgagacggagggagtatttcccagctcctgaatcac 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtcaaaaacattcttatattatgagacggagggagtatttcccagctcctgaatcac 119
Score = 83.8 bits (42), Expect = 3e-17
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 18 tactccctccgtcccataatataagaacatttttgacagtgtagtgtcaaaaacattctt 77
||||||||||||| ||||||||||||| ||||||||| | | ||||||||| |||||
Sbjct: 99 tactccctccgtctcataatataagaatgtttttgacactacactgtcaaaaatgttctt 40
Query: 78 atattatgagacggagggagta 99
|||||||| |||||||||||||
Sbjct: 39 atattatgggacggagggagta 18
>41895_hvu-MIR1120:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 59 tagtgtcaaaaacattcttatattatgagacggagg 94
|||||| |||||||||||||||||||| ||||||||
Sbjct: 45 tagtgtgaaaaacattcttatattatgggacggagg 80
Score = 52.0 bits (26), Expect = 9e-08
Identities = 68/80 (85%), Gaps = 4/80 (5%)
Strand = Plus / Minus
Query: 23 cctccgtcccataatataagaacatttttgac---agtgtagtgtcaaaaacattcttat 79
|||||||||||||||||||||| ||||| || |||||||| | ||||||| ||||||
Sbjct: 80 cctccgtcccataatataagaatgtttttcacactagtgtagtattaaaaacactcttat 21
Query: 80 attatgagacggagggagta 99
| |||| || ||||||||||
Sbjct: 20 a-tatgggaaggagggagta 2
>42167_osa-MIR818d:mirbase
Length = 139
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 17 gtactccctccgtcccataatataag 42
||||||||||||||||||||||||||
Sbjct: 128 gtactccctccgtcccataatataag 103
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 cttatattatgagacggagggagta 99
||||||||||| |||||||||||||
Sbjct: 103 cttatattatgggacggagggagta 127
>42219_osa-MIR1436:mirbase
Length = 161
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tactccctccgtcccataatat 39
||||||||||||||||||||||
Sbjct: 12 tactccctccgtcccataatat 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 18 tactccctccgtcccataat 37
||||||||||||||||||||
Sbjct: 142 tactccctccgtcccataat 123
