miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42655_tae-MIR1122:mirbase
Length = 295
Score = 585 bits (295), Expect = e-168
Identities = 295/295 (100%)
Strand = Plus / Plus
Query: 1 ataagtactccctctgttcctaaatactccctccgtcccaaaaattttggcttagatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataagtactccctctgttcctaaatactccctccgtcccaaaaattttggcttagatttg 60
Query: 61 tctaaatacgtatgtatcaagtcatgttttagtattagatacatccgtatctagactaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctaaatacgtatgtatcaagtcatgttttagtattagatacatccgtatctagactaat 120
Query: 121 ctaagacaagaattttgggacggagggagtataagtctttttagagattccactacaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctaagacaagaattttgggacggagggagtataagtctttttagagattccactacaaac 180
Query: 181 tacatacggatgtatatagacatattttagagtgtagattcactcattttacttcgtatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tacatacggatgtatatagacatattttagagtgtagattcactcattttacttcgtatg 240
Query: 241 tagtccatagtggaatctctaagaaggcatatatttaggaacagagggtgtacca 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagtccatagtggaatctctaagaaggcatatatttaggaacagagggtgtacca 295
Score = 61.9 bits (31), Expect = 3e-10
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 98 gatacatccgtatctagactaatctaagacaagaattttgggacggagggagtat 152
||||||| ||||| ||||| |||||||| ||| | ||||||||||||||||||||
Sbjct: 78 gatacatacgtatttagacaaatctaagccaaaatttttgggacggagggagtat 24
Score = 61.9 bits (31), Expect = 3e-10
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 24 atactccctccgtcccaaaaattttggcttagatttgtctaaatacgtatgtatc 78
|||||||||||||||||||| | ||| |||||||| ||||| ||||| |||||||
Sbjct: 152 atactccctccgtcccaaaattcttgtcttagattagtctagatacggatgtatc 98
>42659_tae-MIR1126:mirbase
Length = 164
Score = 105 bits (53), Expect = 2e-23
Identities = 113/133 (84%)
Strand = Plus / Minus
Query: 150 tataagtctttttagagattccactacaaactacatacggatgtatatagacatatttta 209
||||||||||| |||||||| |||| ||| ||||||| |||||| |||| ||||||
Sbjct: 144 tataagtctttgtagagattttactatgaaccacatacgaatgtatgtagatgcatttta 85
Query: 210 gagtgtagattcactcattttacttcgtatgtagtccatagtggaatctctaagaaggca 269
||||||||||||| | ||||| || |||||||||||||||||||||| |||| ||| |
Sbjct: 84 gagtgtagattcatttattttgctccgtatgtagtccatagtggaatttctataaagact 25
Query: 270 tatatttaggaac 282
|||||||||||||
Sbjct: 24 tatatttaggaac 12
Score = 42.1 bits (21), Expect = 2e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 150 tataagtctttttagagattccactacaaactacatacgga 190
||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 21 tataagtctttatagaaattccactatggactacatacgga 61
>41896_hvu-MIR1126:mirbase
Length = 104
Score = 67.9 bits (34), Expect = 4e-12
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 193 tatatagacatattttagagtgtagattcactcattttacttcgtatgtagtccatagtg 252
|||||||||||| || |||||||| |||||||||||| | |||||||||||||||||
Sbjct: 73 tatatagacataattcagagtgtaagttcactcattttgttccgtatgtagtccatagtt 14
Query: 253 gaatct 258
||||||
Sbjct: 13 gaatct 8
>41899_hvu-MIR5049:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 actccctctgttcctaaatact 28
||||||||||||||||||||||
Sbjct: 1 actccctctgttcctaaatact 22
