miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42661_tae-MIR1128:mirbase
Length = 190
Score = 355 bits (179), Expect = 8e-99
Identities = 188/190 (98%), Gaps = 2/190 (1%)
Strand = Plus / Plus
Query: 1 atatgagagcatgggtgagaggtgcttagttactactccctccgtccgaaaatacttgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atatgagagcatgggtgagaggtgcttagttactactccctccgtccgaaaatacttgtc 60
Query: 61 atcaaaatgaataaaa--ggggatgtatctagaactaaaatacatctagatacatcccct 118
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcaaaatgaataaaaaaggggatgtatctagaactaaaatacatctagatacatcccct 120
Query: 119 tctatccattttgatgacaactatttccggacggagggagtaattgcttcttctggcttg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctatccattttgatgacaactatttccggacggagggagtaattgcttcttctggcttg 180
Query: 179 gcgtttatgt 188
||||||||||
Sbjct: 181 gcgtttatgt 190
Score = 115 bits (58), Expect = 1e-26
Identities = 112/129 (86%), Gaps = 2/129 (1%)
Strand = Plus / Minus
Query: 34 tactccctccgtccgaaaatacttgtcatcaaaatgaataaaaggggatgtatctagaac 93
||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||
Sbjct: 162 tactccctccgtccggaaatagttgtcatcaaaatggatagaaggggatgtatctagatg 103
Query: 94 taaaatacatctagatacatcccc--ttctatccattttgatgacaactatttccggacg 151
|| || ||||||||||||||| || ||| |||||||||||||| ||||| ||||||
Sbjct: 102 tattttagttctagatacatccccttttttattcattttgatgacaagtattttcggacg 43
Query: 152 gagggagta 160
|||||||||
Sbjct: 42 gagggagta 34
>42669_tae-MIR1136:mirbase
Length = 107
Score = 65.9 bits (33), Expect = 1e-11
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 79 ggatgtatctagaactaaaatacatctagatacatcc 115
|||||||| ||||||||||||||||||||||||||||
Sbjct: 72 ggatgtatttagaactaaaatacatctagatacatcc 36
>42668_tae-MIR1135:mirbase
Length = 109
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 79 ggatgtatctagaactaaaatacatctagatacatc 114
||||||||||||||||||||||| ||||||||||||
Sbjct: 37 ggatgtatctagaactaaaatacgtctagatacatc 72
>42660_tae-MIR1127:mirbase
Length = 150
Score = 63.9 bits (32), Expect = 4e-11
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 34 tactccctccgtccgaaaatacttgtcatcaaaatgaataaaaggggatgtatctagaac 93
|||||||||||| || || ||||||||| ||||||| ||||| ||||||||||| |||
Sbjct: 134 tactccctccgttcggaattacttgtcacaaaaatga-taaaaatggatgtatctacaac 76
Query: 94 taaaatacatctagatacat 113
|||||| ||| |||||||||
Sbjct: 75 taaaatgcatttagatacat 56
>41879_far-MIR1122:mirbase
Length = 300
Score = 40.1 bits (20), Expect = 6e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 79 ggatgtatctagaactaaaatacatctagatacatc 114
||||||||||| |||||||||| | ||||||||||
Sbjct: 174 ggatgtatctacaactaaaatatgtttagatacatc 139
