miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42669_tae-MIR1136:mirbase
Length = 107
Score = 212 bits (107), Expect = 4e-56
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
Query: 61 ctaaatacatccatttctgcgacgagtaatttgaaacggagggagta 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaaatacatccatttctgcgacgagtaatttgaaacggagggagta 107
Score = 61.9 bits (31), Expect = 9e-11
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
||||||||||||| | ||||||| ||||||| |||||||||| |||| || || |
Sbjct: 107 tactccctccgtttcaaattactcgtcgcagaaatggatgtatttagaactaaaatacat 48
Query: 61 ctaaatacatccatttctgcgacgagtaatttgaaacggagggagta 107
||| |||||||||| ||||||| ||||||| | |||||||||||||
Sbjct: 47 ctagatacatccatacctgcgacaagtaattcggaacggagggagta 1
>42668_tae-MIR1135:mirbase
Length = 109
Score = 101 bits (51), Expect = 1e-22
Identities = 81/91 (89%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||||| |||||||||||||||| || |||||||||||| |||||||||||
Sbjct: 108 tactccctccgttcggaattacttgtcgcagaaatagatgtatctagacgtattttagtt 49
Query: 61 ctaaatacatccatttctgcgacgagtaatt 91
||| |||||||||| || | ||| |||||||
Sbjct: 48 ctagatacatccatatccgagacaagtaatt 18
Score = 69.9 bits (35), Expect = 4e-13
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||| ||| |||||||||||| | | |||||||||||||||| || || |
Sbjct: 2 tactccctccattcggaattacttgtctcggatatggatgtatctagaactaaaatacgt 61
Query: 61 ctaaatacatccatttctgcgacgagtaatttgaaacggagggagta 107
||| ||||||| ||||||||||| ||||||| |||||||||||||
Sbjct: 62 ctagatacatctatttctgcgacaagtaattccgaacggagggagta 108
>42661_tae-MIR1128:mirbase
Length = 190
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 36 ggatgtatctagatgtattttagttctaaatacatcc 72
|||||||||||||||||||||||||||| ||||||||
Sbjct: 117 ggatgtatctagatgtattttagttctagatacatcc 81
>42660_tae-MIR1127:mirbase
Length = 150
Score = 48.1 bits (24), Expect = 1e-06
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||| ||||||| |||||||| ||| || || ||||||||| ||| |||||||||
Sbjct: 19 tactccttccgttcggaattactcgtccaagaaataaatgtatctaaatgcattttagtt 78
Query: 61 ctaaatacatccattt 76
|| ||||||||||||
Sbjct: 79 gtagatacatccattt 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtc 27
|||||||||||||| ||||||||||||
Sbjct: 134 tactccctccgttcggaattacttgtc 108