miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41681_vvi-MIR403e:mirbase
Length = 115
Score = 228 bits (115), Expect = 7e-61
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgtgtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgtgtac 60
Query: 61 taatcacggggcgattcgacgccgttagattcacgcacaaactcgcgatctgtcc 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taatcacggggcgattcgacgccgttagattcacgcacaaactcgcgatctgtcc 115
>41679_vvi-MIR403c:mirbase
Length = 115
Score = 212 bits (107), Expect = 4e-56
Identities = 113/115 (98%)
Strand = Plus / Plus
Query: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgtgtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgggtac 60
Query: 61 taatcacggggcgattcgacgccgttagattcacgcacaaactcgcgatctgtcc 115
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 taatcacggggcgattcgacgccgttagattcacgcacaaactcgtgatctgtcc 115
>41677_vvi-MIR403a:mirbase
Length = 115
Score = 192 bits (97), Expect = 4e-50
Identities = 103/105 (98%)
Strand = Plus / Plus
Query: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgtgtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgggtac 60
Query: 61 taatcacggggcgattcgacgccgttagattcacgcacaaactcg 105
||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 61 taatcacggggcgattcgacggcgttagattcacgcacaaactcg 105
>41461_ptc-MIR403b:mirbase
Length = 100
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 83 cgttagattcacgcacaaactcgcgatctgtc 114
||||||||||||||||||||||||||||||||
Sbjct: 69 cgttagattcacgcacaaactcgcgatctgtc 100
>41680_vvi-MIR403d:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgcgatctgtc 114
|||||||||||||||||||||| ||||||||
Sbjct: 55 gttagattcacgcacaaactcgggatctgtc 85
>41678_vvi-MIR403b:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgcgatctgtc 114
|||||||||||||||||||||| ||||||||
Sbjct: 55 gttagattcacgcacaaactcgggatctgtc 85
>41156_tcc-MIR403b:mirbase
Length = 123
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgcgatctgtc 114
|||||||||||||||||||||| ||||||||
Sbjct: 82 gttagattcacgcacaaactcgtgatctgtc 112
>41251_csi-MIR403:mirbase
Length = 130
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgcgatctgtc 114
|||||||||||||||||||||| ||| ||||
Sbjct: 99 gttagattcacgcacaaactcgtgatgtgtc 129
>41155_tcc-MIR403a:mirbase
Length = 126
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgcgatctgtc 114
|||||||||||||||||||||| |||||||
Sbjct: 85 gttagattcacgcacaaactcgtaatctgtc 115
>40390_rco-MIR403b:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgcgatc 110
|||||||||||||||||||||| ||||
Sbjct: 72 gttagattcacgcacaaactcgtgatc 98
>40389_rco-MIR403a:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgcgatc 110
|||||||||||||||||||||| ||||
Sbjct: 69 gttagattcacgcacaaactcgtgatc 95
>41682_vvi-MIR403f:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgcgatctgtc 114
||||||||||||||||||||| |||||||
Sbjct: 78 ttagattcacgcacaaactcgtaatctgtc 107
>41460_ptc-MIR403a:mirbase
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgcgatctgtc 114
||||||||||||||||||||| |||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtc 132
>40101_ath-MIR403:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgcgatctgtc 114
||||||||||||||||||||| |||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtc 132
>39896_aly-MIR403:mirbase
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgcgatctgtc 114
||||||||||||||||||||| |||||||
Sbjct: 91 ttagattcacgcacaaactcgtaatctgtc 120
>41462_ptc-MIR403c:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcg 105
|||||||||||||||||||||
Sbjct: 59 ttagattcacgcacaaactcg 79
