miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41683_vvi-MIR408:mirbase
Length = 107
Score = 212 bits (107), Expect = 4e-56
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 aagaggaagacggggacgaggtagtgcatggatggaactattaacagaagaatgttaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaggaagacggggacgaggtagtgcatggatggaactattaacagaagaatgttaagc 60
Query: 61 tgtttttgctctacccatgcactgcctcttccctggctctgtctctc 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtttttgctctacccatgcactgcctcttccctggctctgtctctc 107
>41463_ptc-MIR408:mirbase
Length = 105
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 61 tgtttttgctctacccatgcactgcctcttccctggct 98
|||||| |||||||||||||||||||||||||||||||
Sbjct: 60 tgttttggctctacccatgcactgcctcttccctggct 97
>40108_ath-MIR408:mirbase
Length = 218
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 60 ctgtttttgctctacccatgcactgcctcttccctggctc 99
||||||| |||||||||||||||||||||||||||||||
Sbjct: 103 ctgttttgtctctacccatgcactgcctcttccctggctc 142
>39897_aly-MIR408:mirbase
Length = 211
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 60 ctgtttttgctctacccatgcactgcctcttccctggctc 99
||||||| |||||||||||||||||||||||||||||||
Sbjct: 100 ctgttttgtctctacccatgcactgcctcttccctggctc 139
>40391_rco-MIR408:mirbase
Length = 92
Score = 61.9 bits (31), Expect = 9e-11
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 60 ctgtttttgctctacccatgcactgcctcttccctggct 98
||||||| ||||||||| |||||||||||||||||||||
Sbjct: 50 ctgttttggctctacccctgcactgcctcttccctggct 88
>41252_csi-MIR408:mirbase
Length = 153
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 60 ctgtttttgctctacccatgcactgcctcttccctggctct 100
||||||| |||| |||||||||||||||||||||||||||
Sbjct: 103 ctgttttggctcctcccatgcactgcctcttccctggctct 143
>41193_aqc-MIR408:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 61 tgtttttgctctacccatgcactgcctcttccctggct 98
|||| ||||||| ||||||||||||||||||||||||
Sbjct: 38 tgttgttgctctttccatgcactgcctcttccctggct 1
>40405_ahy-MIR408:mirbase
Length = 122
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 catgcactgcctcttccctggctct 100
|||||||||||||||||||||||||
Sbjct: 80 catgcactgcctcttccctggctct 104
>40404_ahy-MIR408:mirbase
Length = 122
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 catgcactgcctcttccctggctct 100
|||||||||||||||||||||||||
Sbjct: 80 catgcactgcctcttccctggctct 104
>42474_ssp-MIR408d:mirbase
Length = 180
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 73 acccatgcactgcctcttccctggctc 99
|||| ||||||||||||||||||||||
Sbjct: 154 acccctgcactgcctcttccctggctc 180
>42465_sof-MIR408d:mirbase
Length = 215
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 73 acccatgcactgcctcttccctggctc 99
|||| ||||||||||||||||||||||
Sbjct: 172 acccctgcactgcctcttccctggctc 198
>39490_ppt-MIR408b:mirbase
Length = 144
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 catgcactgcctcttccctggct 98
|||||||||||||||||||||||
Sbjct: 92 catgcactgcctcttccctggct 114
>39428_pta-MIR408:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 atgcactgcctcttccctggctc 99
|||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggctc 86
>42830_zma-MIR408b:mirbase
Length = 147
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggctc 99
||||||||||||||||||||||
Sbjct: 126 tgcactgcctcttccctggctc 147
>42829_zma-MIR408:mirbase
Length = 191
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggctc 99
||||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggctc 174
>42647_tae-MIR408:mirbase
Length = 187
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggctc 99
||||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggctc 158
>42473_ssp-MIR408a:mirbase
Length = 248
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggctc 99
||||||||||||||||||||||
Sbjct: 227 tgcactgcctcttccctggctc 248
>42464_sof-MIR408c:mirbase
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggctc 99
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>42463_sof-MIR408b:mirbase
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggctc 99
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>42462_sof-MIR408a:mirbase
Length = 283
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggctc 99
||||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggctc 266
>42052_osa-MIR408:mirbase
Length = 213
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggctc 99
||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175
>39742_smo-MIR408:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 atgcactgcctcttccctggct 98
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>42600_sbi-MIR408:mirbase
Length = 205
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggct 98
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
