miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42742_zma-MIR168b:mirbase
Length = 104
Score = 206 bits (104), Expect = 2e-54
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 tccgccgcgccgtctcgggctcgcttggtgcagatcgggacccgccgcccggccgacggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccgccgcgccgtctcgggctcgcttggtgcagatcgggacccgccgcccggccgacggg 60
Query: 61 acggatcccgccttgcatcaagtgaatcggagccggcgcagcga 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acggatcccgccttgcatcaagtgaatcggagccggcgcagcga 104
>42459_sof-MIR168a:mirbase
Length = 104
Score = 184 bits (93), Expect = 8e-48
Identities = 99/101 (98%)
Strand = Plus / Plus
Query: 2 ccgccgcgccgtctcgggctcgcttggtgcagatcgggacccgccgcccggccgacggga 61
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccgccgcgccgcctcgggctcgcttggtgcagatcgggacccgccgcccggccgacggga 61
Query: 62 cggatcccgccttgcatcaagtgaatcggagccggcgcagc 102
|||||||||||||||| ||||||||||||||||||||||||
Sbjct: 62 cggatcccgccttgcaccaagtgaatcggagccggcgcagc 102
>42470_ssp-MIR168a:mirbase
Length = 99
Score = 180 bits (91), Expect = 1e-46
Identities = 97/99 (97%)
Strand = Plus / Plus
Query: 4 gccgcgccgtctcgggctcgcttggtgcagatcgggacccgccgcccggccgacgggacg 63
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccgcgccgcctcgggctcgcttggtgcagatcgggacccgccgcccggccgacgggacg 60
Query: 64 gatcccgccttgcatcaagtgaatcggagccggcgcagc 102
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 gatcccgccttgcaccaagtgaatcggagccggcgcagc 99
>42741_zma-MIR168a:mirbase
Length = 104
Score = 176 bits (89), Expect = 2e-45
Identities = 98/101 (97%)
Strand = Plus / Plus
Query: 4 gccgcgccgtctcgggctcgcttggtgcagatcgggacccgccgcccggccgacgggacg 63
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gccgcgccgcctcgggctcgcttggtgcagatcgggacccgccgcccggccgacgggacg 63
Query: 64 gatcccgccttgcatcaagtgaatcggagccggcgcagcga 104
|||||||||||||| |||||||||||||||||||| |||||
Sbjct: 64 gatcccgccttgcaccaagtgaatcggagccggcggagcga 104
>42460_sof-MIR168b:mirbase
Length = 103
Score = 155 bits (78), Expect = 8e-39
Identities = 95/98 (96%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 5 ccgcgccgtctcgggctcgcttggtgcagatcgggacccgccgcccggccgacgggacgg 64
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6 ccgcgccgtct-gggctcgcttgg-gcagatcgggacccgccgcccggccgacgggacgg 63
Query: 65 atcccgccttgcatcaagtgaatcggagccggcgcagc 102
||||||||||||| ||||||||||||||||||||||||
Sbjct: 64 atcccgccttgcaccaagtgaatcggagccggcgcagc 101
>41888_hvu-MIR168:mirbase
Length = 106
Score = 137 bits (69), Expect = 2e-33
Identities = 91/97 (93%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 8 cgccgtctcgggctcgcttggtgcagatcgggacccgccgcccggcc-gacgggacggat 66
||||| |||||||||||||||||||||||||||||| ||||||| || |||||| |||||
Sbjct: 10 cgccgcctcgggctcgcttggtgcagatcgggaccctccgcccgccccgacgggccggat 69
Query: 67 cccgccttgcatcaagtgaatcggagccggcgcagcg 103
||||||||||| |||||||||||||||||||||||||
Sbjct: 70 cccgccttgcaccaagtgaatcggagccggcgcagcg 106
>41887_hvu-MIR168:mirbase
Length = 106
Score = 137 bits (69), Expect = 2e-33
Identities = 91/97 (93%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 8 cgccgtctcgggctcgcttggtgcagatcgggacccgccgcccggcc-gacgggacggat 66
||||| |||||||||||||||||||||||||||||| ||||||| || |||||| |||||
Sbjct: 10 cgccgcctcgggctcgcttggtgcagatcgggaccctccgcccgccccgacgggccggat 69
Query: 67 cccgccttgcatcaagtgaatcggagccggcgcagcg 103
||||||||||| |||||||||||||||||||||||||
Sbjct: 70 cccgccttgcaccaagtgaatcggagccggcgcagcg 106
>41753_bdi-MIR168:mirbase
Length = 136
Score = 127 bits (64), Expect = 2e-30
Identities = 91/99 (91%), Gaps = 2/99 (2%)
Strand = Plus / Plus
Query: 8 cgccgtctcgggctcgcttggtgcagatcgggacccgccgcccggcc--gacgggacgga 65
||||| |||||||||||||||||||||||||||||| ||||||| || | |||| ||||
Sbjct: 18 cgccgcctcgggctcgcttggtgcagatcgggaccctccgcccgcccccgccgggccgga 77
Query: 66 tcccgccttgcatcaagtgaatcggagccggcgcagcga 104
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 78 tcccgccttgcaccaagtgaatcggagccggcgcagcga 116
>42528_sbi-MIR168:mirbase
Length = 106
Score = 111 bits (56), Expect = 1e-25
Identities = 92/103 (89%), Gaps = 2/103 (1%)
Strand = Plus / Plus
Query: 2 ccgccgcgccgtctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacgg 59
||||||||||| ||||||||||||||||||||||||||||| |||||| | | |||||
Sbjct: 2 ccgccgcgccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgg 61
Query: 60 gacggatcccgccttgcatcaagtgaatcggagccggcgcagc 102
||| |||||||||||||| |||||||||| ||||||| |||||
Sbjct: 62 gacagatcccgccttgcaccaagtgaatccgagccggagcagc 104
>41962_osa-MIR168a:mirbase
Length = 87
Score = 95.6 bits (48), Expect = 6e-21
Identities = 77/84 (91%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 14 ctcgggctcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcccgc 71
|||||||||||||||||||||||||||||||||||| | || | | ||| ||||||||||
Sbjct: 4 ctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgc 63
Query: 72 cttgcatcaagtgaatcggagccg 95
|||||| |||||||||||||||||
Sbjct: 64 cttgcaccaagtgaatcggagccg 87
>41961_osa-MIR168a:mirbase
Length = 87
Score = 95.6 bits (48), Expect = 6e-21
Identities = 77/84 (91%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 14 ctcgggctcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcccgc 71
|||||||||||||||||||||||||||||||||||| | || | | ||| ||||||||||
Sbjct: 4 ctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgc 63
Query: 72 cttgcatcaagtgaatcggagccg 95
|||||| |||||||||||||||||
Sbjct: 64 cttgcaccaagtgaatcggagccg 87
>41596_vvi-MIR168:mirbase
Length = 132
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 64 gatcccgccttgcatcaagtgaatcggagccggc 97
|||||||||||||||||| |||||||||| ||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggagacggc 132
>41348_ptc-MIR168b:mirbase
Length = 136
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggag 92
||||||||||||||||||| ||||||||||
Sbjct: 106 ggatcccgccttgcatcaactgaatcggag 135
>41347_ptc-MIR168a:mirbase
Length = 160
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggag 92
||||||||||||||||||| ||||||||||
Sbjct: 130 ggatcccgccttgcatcaactgaatcggag 159
>41215_crt-MIR168:mirbase
Length = 201
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggag 92
||||||||||||||||||| ||||||||||
Sbjct: 139 ggatcccgccttgcatcaactgaatcggag 168
>41210_ccl-MIR168:mirbase
Length = 176
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggag 92
||||||||||||||||||| ||||||||||
Sbjct: 138 ggatcccgccttgcatcaactgaatcggag 167
>41101_tcc-MIR168:mirbase
Length = 167
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggag 92
||||||||||||||||||| ||||||||||
Sbjct: 123 ggatcccgccttgcatcaactgaatcggag 152
>40448_gma-MIR168:mirbase
Length = 125
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggag 92
||||||||||||||||||| ||||||||||
Sbjct: 84 ggatcccgccttgcatcaactgaatcggag 113
>40043_ath-MIR168a:mirbase
Length = 138
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcgga 91
||||||||||||||||||| |||||||||
Sbjct: 99 ggatcccgccttgcatcaactgaatcgga 127
>39832_aly-MIR168a:mirbase
Length = 155
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcgga 91
||||||||||||||||||| |||||||||
Sbjct: 105 ggatcccgccttgcatcaactgaatcgga 133
>40355_rco-MIR168:mirbase
Length = 131
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcg 89
||||||||||||||||||| |||||||
Sbjct: 102 ggatcccgccttgcatcaactgaatcg 128
>40271_bna-MIR168:mirbase
Length = 133
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 62 cggatcccgccttgcatcaagtgaatc 88
|||||||||||||| ||||||||||||
Sbjct: 93 cggatcccgccttgtatcaagtgaatc 119
