miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42763_zma-MIR171c:mirbase
Length = 118
Score = 234 bits (118), Expect = 1e-62
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 ggggaatcgaaaacctacgggatattggtgcggttcaatcagaaagcttgcgctccaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggggaatcgaaaacctacgggatattggtgcggttcaatcagaaagcttgcgctccaaag 60
Query: 61 cccaggggctccactctttgactgagccgtgccaatatcacgtcctcgctttgcttgc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccaggggctccactctttgactgagccgtgccaatatcacgtcctcgctttgcttgc 118
>42556_sbi-MIR171k:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 18 cgggatattggtgcggttcaatcagaaagcttgcgctccaaagcccaggggctccactct 77
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgggatattggcgcggttcaatcagaaagcttgcgctccaaagcccaggggctccactct 60
Query: 78 ttgactgagccgtgccaatatcacgtc 104
|||| ||||||||||||||||||||||
Sbjct: 61 ttgattgagccgtgccaatatcacgtc 87
>41983_osa-MIR171c:mirbase
Length = 99
Score = 135 bits (68), Expect = 8e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 17 acgggatattggtgcggttcaatcagaaagcttgcgctccaaagcccaggggctccactc 76
|||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||
Sbjct: 7 acgggatattggtgcggttcaatcagaaagcttgtgctccgaaggcgaggggctccactc 66
Query: 77 tttgactgagccgtgccaatatcacgtc 104
||||| ||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacgtc 94
>42762_zma-MIR171b:mirbase
Length = 85
Score = 121 bits (61), Expect = 1e-28
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 18 cgggatattggtgcggttcaatcagaaagcttgcgctccaaagcccaggggctccactct 77
||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1 cgggatattggcgcggttcaatcagaaagcttgcgctccaggcccgaggggctccactct 60
Query: 78 ttgactgagccgtgccaatatcacg 102
|||| ||||||||||||||||||||
Sbjct: 61 ttgattgagccgtgccaatatcacg 85
>41982_osa-MIR171b:mirbase
Length = 100
Score = 81.8 bits (41), Expect = 1e-16
Identities = 78/89 (87%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 17 acgggatattggtgcggttcaatcagaaagcttgcgctccaaagcccaggggctccactc 76
|||||||||||| ||||||||||||||||||||| ||||| | | ||| |||| ||||
Sbjct: 7 acgggatattggggcggttcaatcagaaagcttgtgctccggaagcgaggagctctactc 66
Query: 77 -tttgactgagccgtgccaatatcacgtc 104
||||| ||||||||||||||||||||||
Sbjct: 67 ttttgattgagccgtgccaatatcacgtc 95
>41766_bdi-MIR171c:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 2e-12
Identities = 70/81 (86%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 23 tattggtgcggttcaatcagaaagcttgcgctccaaagcc--caggggctccactctttg 80
|||||||||||||||||||||||||| ||||||| | | ||||| ||| |||||||
Sbjct: 6 tattggtgcggttcaatcagaaagctggcgctccggacgcaaaaggggttcctctctttg 65
Query: 81 actgagccgtgccaatatcac 101
| |||||||||||||||||||
Sbjct: 66 attgagccgtgccaatatcac 86
>42641_tae-MIR171b:mirbase
Length = 138
Score = 58.0 bits (29), Expect = 2e-09
Identities = 69/81 (85%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 23 tattggtgcggttcaatcagaaagcttgcgctcca-aagcccaggggctccactctttga 81
||||||||||||||||||||| |||| |||| ||| || | ||||| ||| | ||| ||
Sbjct: 32 tattggtgcggttcaatcagagagctggcgccccaggaggcaaggggttcctcccttcga 91
Query: 82 ctgagccgtgccaatatcacg 102
||||||||||||||||||||
Sbjct: 92 ttgagccgtgccaatatcacg 112
>41624_vvi-MIR171c:mirbase
Length = 103
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 16 tacgggatattggtgcggttcaatcagaaagc 47
|||||||||||||||||||||||| |||||||
Sbjct: 7 tacgggatattggtgcggttcaataagaaagc 38
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatcacgt 94
>41625_vvi-MIR171d:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgtcct 106
||||| ||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacgtcct 94
>41381_ptc-MIR171a:mirbase
Length = 104
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 17 acgggatattggtgcggttcaatcagaaag 46
||||||||||||| ||||||||||||||||
Sbjct: 10 acgggatattggtacggttcaatcagaaag 39
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcacgt 96
>40062_ath-MIR171c:mirbase
Length = 116
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 16 tacgggatattggtgcggttcaatcagaaa 45
|||| |||||||||||||||||||||||||
Sbjct: 24 tacgagatattggtgcggttcaatcagaaa 53
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacg 102
||||| ||||||||||||||||||||
Sbjct: 85 tttgattgagccgtgccaatatcacg 110
>39851_aly-MIR171c:mirbase
Length = 111
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 16 tacgggatattggtgcggttcaatcagaaa 45
|||| |||||||||||||||||||||||||
Sbjct: 11 tacgagatattggtgcggttcaatcagaaa 40
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 72 tttgattgagccgtgccaatatcacgt 98
>42770_zma-MIR171j:mirbase
Length = 129
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 65 ggggctccactctttgactgagccgtgccaatatcacgtcc 105
||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 76 ggggctctgctctctgattgagccgtgccaatatcacgtcc 116
>42547_sbi-MIR171b:mirbase
Length = 132
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 65 ggggctccactctttgactgagccgtgccaatatcacgtcc 105
||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 79 ggggctctgctctctgattgagccgtgccaatatcacgtcc 119
>41231_csi-MIR171a:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 acgggatattggtgcggttcaatcagaaa 45
||||||||||||||||||||||| |||||
Sbjct: 6 acgggatattggtgcggttcaataagaaa 34
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 68 gctccactctttgactgagccgtgccaatatcacgt 103
||||| || ||||| ||||||| |||||||||||||
Sbjct: 56 gctccgctttttgattgagccgcgccaatatcacgt 91
>41216_crt-MIR171:mirbase
Length = 201
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 acgggatattggtgcggttcaatcagaaa 45
||||||||||||||||||||||| |||||
Sbjct: 100 acgggatattggtgcggttcaataagaaa 128
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 68 gctccactctttgactgagccgtgccaatatcacgt 103
||||| || ||||| |||||||||||||||||||||
Sbjct: 150 gctccgctttttgattgagccgtgccaatatcacgt 185
>41211_ccl-MIR171:mirbase
Length = 321
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 acgggatattggtgcggttcaatcagaaa 45
||||||||||||||||||||||| |||||
Sbjct: 61 acgggatattggtgcggttcaataagaaa 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 68 gctccactctttgactgagccgtgccaatatcacgt 103
||||| || ||||| ||||||| |||||||||||||
Sbjct: 111 gctccgctttttgattgagccgcgccaatatcacgt 146
>40305_bol-MIR171a:mirbase
Length = 96
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 gatattggtgcggttcaatcagaaa 45
|||||||||||||||||||||||||
Sbjct: 10 gatattggtgcggttcaatcagaaa 34
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacg 102
||||| ||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacg 91
>40288_bna-MIR171d:mirbase
Length = 96
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 gatattggtgcggttcaatcagaaa 45
|||||||||||||||||||||||||
Sbjct: 10 gatattggtgcggttcaatcagaaa 34
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacg 102
||||| ||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacg 91
>40700_mtr-MIR171f:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 gatattggtgcggttcaatcagaa 44
||||||||||||||||||||||||
Sbjct: 6 gatattggtgcggttcaatcagaa 29
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacgt 91
>40457_gma-MIR171c:mirbase
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 gatattggtgcggttcaatcagaa 44
||||||||||||||||||||||||
Sbjct: 13 gatattggtgcggttcaatcagaa 36
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcac 101
||||| |||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcac 94
>40360_rco-MIR171b:mirbase
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 tacgggatattggtgcggttcaatcaga 43
|||| |||||||||||||||||||||||
Sbjct: 2 tacgagatattggtgcggttcaatcaga 29
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 61 tttgattgagccgtgccaatatcacgt 87
>41540_sly-MIR171c:mirbase
Length = 121
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 gatattggtgcggttcaatcagaaagc 47
||||||||||||||||||| |||||||
Sbjct: 20 gatattggtgcggttcaatgagaaagc 46
>41539_sly-MIR171b:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 gatattggtgcggttcaatcagaaagc 47
||||||||||||||||||| |||||||
Sbjct: 5 gatattggtgcggttcaattagaaagc 31
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgagccgtgccaatatcacgt 103
|||||||||||||||||||||
Sbjct: 66 tgagccgtgccaatatcacgt 86
>41382_ptc-MIR171b:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 gatattggtgcggttcaatcaga 43
|||||||||||||||||||||||
Sbjct: 14 gatattggtgcggttcaatcaga 36
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 69 tttgattgagccgtgccaatatcacgt 95
>41121_tcc-MIR171f:mirbase
Length = 117
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 75 tttgattgagccgtgccaatatcacgt 101
>41119_tcc-MIR171d:mirbase
Length = 117
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 75 tttgattgagccgtgccaatatcacgt 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 gatattggtgcggttcaatc 40
||||||||||||||||||||
Sbjct: 21 gatattggtgcggttcaatc 40
>40454_gma-MIR171a:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 17 acgggatattggtgcggttcaatcagaaagc 47
||||||||||||| ||||||||| |||||||
Sbjct: 6 acgggatattggtccggttcaataagaaagc 36
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 tgagccgtgccaatatcacg 102
||||||||||||||||||||
Sbjct: 72 tgagccgtgccaatatcacg 91
>40359_rco-MIR171a:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatatcacgt 88
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 17 acgggatattggtgcggttcaatcagaaa 45
||||||||||||| ||||||||| |||||
Sbjct: 3 acgggatattggtccggttcaataagaaa 31
>40318_bra-MIR171a:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacg 102
||||| ||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatcacg 85
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 21 gatattggtgcggttcaatcagaaa 45
|||||||||| ||||||||||||||
Sbjct: 4 gatattggtgtggttcaatcagaaa 28
>40289_bna-MIR171e:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 16 tacgggatattggtgcggttcaatcagaaa 45
|||| |||||||||| ||||||||||||||
Sbjct: 4 tacgagatattggtgtggttcaatcagaaa 33
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacg 102
||||| ||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacg 90
>42546_sbi-MIR171a:mirbase
Length = 161
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcac 101
||||| |||||||||||||||||||
Sbjct: 120 tttgattgagccgtgccaatatcac 144
>41182_aqc-MIR171f:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tgagccgtgccaatatcacgt 103
|||||||||||||||||||||
Sbjct: 66 tgagccgtgccaatatcacgt 86
>42769_zma-MIR171i:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 78 ttgactgagccgtgccaatatcac 101
|||| |||||||||||||||||||
Sbjct: 64 ttgattgagccgtgccaatatcac 87
>42766_zma-MIR171f:mirbase
Length = 155
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 78 ttgactgagccgtgccaatatcac 101
|||| |||||||||||||||||||
Sbjct: 114 ttgattgagccgtgccaatatcac 137
>40362_rco-MIR171d:mirbase
Length = 124
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 ctttgactgagccgtgccaatatc 99
|||||| |||||||||||||||||
Sbjct: 96 ctttgattgagccgtgccaatatc 119
>40321_bra-MIR171d:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 tgagccgtgccaatatcacg 102
||||||||||||||||||||
Sbjct: 74 tgagccgtgccaatatcacg 93
>40320_bra-MIR171c:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 tgagccgtgccaatatcacg 102
||||||||||||||||||||
Sbjct: 68 tgagccgtgccaatatcacg 87
>40319_bra-MIR171b:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 tgagccgtgccaatatcacg 102
||||||||||||||||||||
Sbjct: 75 tgagccgtgccaatatcacg 94
>40287_bna-MIR171c:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 tgagccgtgccaatatcacg 102
||||||||||||||||||||
Sbjct: 68 tgagccgtgccaatatcacg 87
>40286_bna-MIR171b:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 tgagccgtgccaatatcacg 102
||||||||||||||||||||
Sbjct: 74 tgagccgtgccaatatcacg 93
>40285_bna-MIR171a:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 tgagccgtgccaatatcacg 102
||||||||||||||||||||
Sbjct: 75 tgagccgtgccaatatcacg 94
>40061_ath-MIR171b:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 tgagccgtgccaatatcacg 102
||||||||||||||||||||
Sbjct: 79 tgagccgtgccaatatcacg 98
>39850_aly-MIR171b:mirbase
Length = 137
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 tgagccgtgccaatatcacg 102
||||||||||||||||||||
Sbjct: 90 tgagccgtgccaatatcacg 109
