miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42768_zma-MIR171h:mirbase
Length = 124
Score = 246 bits (124), Expect = 3e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 gggaggaaggagacgacatggcgtggtattgtttcggctcatgtccttcttcgatcgagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggaggaaggagacgacatggcgtggtattgtttcggctcatgtccttcttcgatcgagt 60
Query: 61 cttgccgttggatttggatgtgatgtgagccgaaccaatatcactcatgtactcttcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttgccgttggatttggatgtgatgtgagccgaaccaatatcactcatgtactcttcatt 120
Query: 121 ccca 124
||||
Sbjct: 121 ccca 124
>42550_sbi-MIR171e:mirbase
Length = 124
Score = 153 bits (77), Expect = 4e-38
Identities = 112/121 (92%), Gaps = 2/121 (1%)
Strand = Plus / Plus
Query: 2 ggaggaaggagacgacatggcgtggtattgtttcggctcatgtccttcttcgatcgagtc 61
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2 ggaggaagaagacgacatggcgtggtattgtttcggctcatgtccttcttgcttcgagtc 61
Query: 62 ttgccgttgga-tttggatgtgatgtgagccgaaccaatatcactcatgtactcttcatt 120
|| ||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 62 -tgtcgtcggattttggatgtgatgtgagccgaaccaatatcactcatgtattcttcatt 120
Query: 121 c 121
|
Sbjct: 121 c 121
>42771_zma-MIR171k:mirbase
Length = 104
Score = 93.7 bits (47), Expect = 3e-20
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 1 gggaggaaggagacgacatggcgtggtattgtttcggctcatgtccttctt 51
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggaggaagaagacgacatggcgtggtattgtttcggctcatgtccttctt 51
Score = 85.7 bits (43), Expect = 7e-18
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 75 tggatgtgatgtgagccgaaccaatatcactcatgtactcttcattc 121
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 55 tggatgtgatgtgagccgaaccaatatcactcatgtattcttcattc 101
>41988_osa-MIR171h:mirbase
Length = 101
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 82 gatgtgagccgaaccaatatcactcatgtactcttcattc 121
|||||||||||||||||||||||||||||| |||||||||
Sbjct: 51 gatgtgagccgaaccaatatcactcatgtattcttcattc 90
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 6 gaaggagacgacatggcgtggtattgtttcggctcatgtc 45
|||| ||| ||||||| ||||||||||||||||||||||
Sbjct: 2 gaagaagaggacatggtttggtattgtttcggctcatgtc 41
>42551_sbi-MIR171f:mirbase
Length = 119
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 86 tgagccgaaccaatatcactcatgtactcttcattc 121
|||||||||||||||||||||||||| |||||||||
Sbjct: 81 tgagccgaaccaatatcactcatgtattcttcattc 116
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 11 agacgacatggcgtggtattgtttcggctcatg 43
||||||||||||||| | |||||||||||||||
Sbjct: 11 agacgacatggcgtgatgttgtttcggctcatg 43
>41686_vvi-MIR479:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 87 gagccgaaccaatatcactcatgta 111
|||||||||||||||||||| ||||
Sbjct: 64 gagccgaaccaatatcactcttgta 88
>41064_ghr-MIR479:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 87 gagccgaaccaatatcactcatgta 111
|||||||| ||||||||||||||||
Sbjct: 64 gagccgaatcaatatcactcatgta 88
>41393_ptc-MIR171m:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 15 gacatggcgtggtattgtttcggctcat 42
||||||||||||||||| | ||||||||
Sbjct: 7 gacatggcgtggtattgatccggctcat 34
