miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42769_zma-MIR171i:mirbase
Length = 104
Score = 206 bits (104), Expect = 2e-54
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 ctggttggctgagagagtgcgatgttggcacggttcaatcaaatcgccggccgggttgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggttggctgagagagtgcgatgttggcacggttcaatcaaatcgccggccgggttgac 60
Query: 61 ttgttgattgagccgtgccaatatcacaaccttctctagcctag 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgttgattgagccgtgccaatatcacaaccttctctagcctag 104
>42766_zma-MIR171f:mirbase
Length = 155
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcacaaccttctctagccta 103
||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ttgattgagccgtgccaatatcacaaccttctctagccta 153
Score = 75.8 bits (38), Expect = 6e-15
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 4 gttggctgagagagtgcgatgttggcacggttcaatcaaatcgccggccg 53
||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct: 7 gttggctgagagagtgcgatgttggcatggctcaatcaactcgccggccg 56
>42546_sbi-MIR171a:mirbase
Length = 161
Score = 79.8 bits (40), Expect = 4e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 2 tggttggctgagagagtgcgatgttggcacggttcaatcaaatc 45
||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2 tggttggctgagagagtgcgatgttggcatggttcaatcaaatc 45
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcacaaccttctctagccta 103
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgattgagccgtgccaatatcacaaccttctctagccta 160
>41765_bdi-MIR171b:mirbase
Length = 164
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 6 tggctgagagagtgcgatgttggcacggttcaatcaaatcg 46
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 17 tggctgggagagtgcgatgttggcacggttcaatcaaatcg 57
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatcacaaccttct 95
||||||||||||||||||||| ||| |||||
Sbjct: 114 tgattgagccgtgccaatatcgcaagcttct 144
>41986_osa-MIR171f:mirbase
Length = 127
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 13 gagagtgcgatgttggcacggttcaatcaaa 43
|||||||||||||||||| ||||||||||||
Sbjct: 3 gagagtgcgatgttggcatggttcaatcaaa 33
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatcacaa 89
|||||||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatatcacaa 121
>40457_gma-MIR171c:mirbase
Length = 104
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcaca 88
|||||||||||||||||||||||||
Sbjct: 71 ttgattgagccgtgccaatatcaca 95
>42762_zma-MIR171b:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 61 ttgattgagccgtgccaatatcac 84
>42556_sbi-MIR171k:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 61 ttgattgagccgtgccaatatcac 84
>41983_osa-MIR171c:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 68 ttgattgagccgtgccaatatcac 91
>41982_osa-MIR171b:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 69 ttgattgagccgtgccaatatcac 92
>41874_far-MIR171:mirbase
Length = 130
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 gagtgcgatgttggcacggttcaatcaa 42
|||||||||||||||| |||||||||||
Sbjct: 1 gagtgcgatgttggcatggttcaatcaa 28
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatcacaaccttc 94
||||||||||||||||||||| ||| ||||
Sbjct: 90 tgattgagccgtgccaatatcgcaagcttc 119
>41766_bdi-MIR171c:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 63 ttgattgagccgtgccaatatcac 86
>41625_vvi-MIR171d:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 66 ttgattgagccgtgccaatatcac 89
>41624_vvi-MIR171c:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 69 ttgattgagccgtgccaatatcac 92
>41388_ptc-MIR171h:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatcaca 88
||||||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatcaca 94
>41387_ptc-MIR171g:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatcaca 88
||||||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatcaca 94
>41382_ptc-MIR171b:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 70 ttgattgagccgtgccaatatcac 93
>41381_ptc-MIR171a:mirbase
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 71 ttgattgagccgtgccaatatcac 94
>41216_crt-MIR171:mirbase
Length = 201
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 160 ttgattgagccgtgccaatatcac 183
>41122_tcc-MIR171g:mirbase
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatcaca 88
||||||||||||||||||||||||
Sbjct: 75 tgattgagccgtgccaatatcaca 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 gatgttggcacggttcaatc 40
||||||||||||||||||||
Sbjct: 21 gatgttggcacggttcaatc 40
>41121_tcc-MIR171f:mirbase
Length = 117
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 76 ttgattgagccgtgccaatatcac 99
>41119_tcc-MIR171d:mirbase
Length = 117
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 76 ttgattgagccgtgccaatatcac 99
>40700_mtr-MIR171f:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 66 ttgattgagccgtgccaatatcac 89
>40360_rco-MIR171b:mirbase
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 62 ttgattgagccgtgccaatatcac 85
>40359_rco-MIR171a:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 63 ttgattgagccgtgccaatatcac 86
>40318_bra-MIR171a:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 61 ttgattgagccgtgccaatatcac 84
>40305_bol-MIR171a:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 67 ttgattgagccgtgccaatatcac 90
>40289_bna-MIR171e:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 66 ttgattgagccgtgccaatatcac 89
>40288_bna-MIR171d:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 67 ttgattgagccgtgccaatatcac 90
>40062_ath-MIR171c:mirbase
Length = 116
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 86 ttgattgagccgtgccaatatcac 109
>39851_aly-MIR171c:mirbase
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatcac 87
||||||||||||||||||||||||
Sbjct: 73 ttgattgagccgtgccaatatcac 96
>42770_zma-MIR171j:mirbase
Length = 129
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatcac 87
|||||||||||||||||||||||
Sbjct: 90 tgattgagccgtgccaatatcac 112
>42547_sbi-MIR171b:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatcac 87
|||||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatcac 115
>41178_aqc-MIR171b:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatcac 87
|||||||||||||||||||||||
Sbjct: 55 tgattgagccgtgccaatatcac 77
>42641_tae-MIR171b:mirbase
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gattgagccgtgccaatatcac 87
||||||||||||||||||||||
Sbjct: 90 gattgagccgtgccaatatcac 111
>41630_vvi-MIR171i:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatca 86
||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatca 90
>41622_vvi-MIR171a:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatca 86
||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatca 89
>41538_sly-MIR171a:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatc 85
||||||||||||||||||||||
Sbjct: 86 ttgattgagccgtgccaatatc 107
>41389_ptc-MIR171i:mirbase
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatc 85
||||||||||||||||||||||
Sbjct: 99 ttgattgagccgtgccaatatc 120
>41181_aqc-MIR171e:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 64 ttgattgagccgtgccaatatc 85
||||||||||||||||||||||
Sbjct: 22 ttgattgagccgtgccaatatc 1
>41180_aqc-MIR171d:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatc 85
||||||||||||||||||||||
Sbjct: 83 ttgattgagccgtgccaatatc 104
>41177_aqc-MIR171a:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatc 85
||||||||||||||||||||||
Sbjct: 79 ttgattgagccgtgccaatatc 100
>41120_tcc-MIR171e:mirbase
Length = 161
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatc 85
||||||||||||||||||||||
Sbjct: 120 ttgattgagccgtgccaatatc 141
>40701_mtr-MIR171g:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatc 85
||||||||||||||||||||||
Sbjct: 79 ttgattgagccgtgccaatatc 100
>40698_mtr-MIR171d:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatc 85
||||||||||||||||||||||
Sbjct: 79 ttgattgagccgtgccaatatc 100
>40364_rco-MIR171f:mirbase
Length = 111
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatc 85
||||||||||||||||||||||
Sbjct: 85 ttgattgagccgtgccaatatc 106
>40362_rco-MIR171d:mirbase
Length = 124
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 ttgattgagccgtgccaatatc 85
||||||||||||||||||||||
Sbjct: 98 ttgattgagccgtgccaatatc 119
>40361_rco-MIR171c:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 gatgttggcacggttcaatcaaatcg 46
|||||||||| |||||||||||||||
Sbjct: 4 gatgttggcatggttcaatcaaatcg 29
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>40321_bra-MIR171d:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gattgagccgtgccaatatcac 87
||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcac 92
>40320_bra-MIR171c:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gattgagccgtgccaatatcac 87
||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcac 86
>40319_bra-MIR171b:mirbase
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gattgagccgtgccaatatcac 87
||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcac 93
>40287_bna-MIR171c:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gattgagccgtgccaatatcac 87
||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcac 86
>40286_bna-MIR171b:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gattgagccgtgccaatatcac 87
||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcac 92
>40285_bna-MIR171a:mirbase
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gattgagccgtgccaatatcac 87
||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcac 93
>40061_ath-MIR171b:mirbase
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gattgagccgtgccaatatcac 87
||||||||||||||||||||||
Sbjct: 76 gattgagccgtgccaatatcac 97
>39850_aly-MIR171b:mirbase
Length = 137
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gattgagccgtgccaatatcac 87
||||||||||||||||||||||
Sbjct: 87 gattgagccgtgccaatatcac 108
>39736_smo-MIR171a:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gattgagccgtgccaatatcac 87
||||||||||||||||||||||
Sbjct: 103 gattgagccgtgccaatatcac 124
