miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42771_zma-MIR171k:mirbase
Length = 104
Score = 206 bits (104), Expect = 2e-54
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 gggaggaagaagacgacatggcgtggtattgtttcggctcatgtccttcttgactggatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggaggaagaagacgacatggcgtggtattgtttcggctcatgtccttcttgactggatg 60
Query: 61 tgatgtgagccgaaccaatatcactcatgtattcttcattctga 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgatgtgagccgaaccaatatcactcatgtattcttcattctga 104
>42550_sbi-MIR171e:mirbase
Length = 124
Score = 101 bits (51), Expect = 1e-22
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 2 ggaggaagaagacgacatggcgtggtattgtttcggctcatgtccttcttg 52
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ggaggaagaagacgacatggcgtggtattgtttcggctcatgtccttcttg 52
Score = 99.6 bits (50), Expect = 4e-22
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 55 tggatgtgatgtgagccgaaccaatatcactcatgtattcttcattctga 104
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 tggatgtgatgtgagccgaaccaatatcactcatgtattcttcattctga 124
>42768_zma-MIR171h:mirbase
Length = 124
Score = 93.7 bits (47), Expect = 2e-20
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 1 gggaggaagaagacgacatggcgtggtattgtttcggctcatgtccttctt 51
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggaggaaggagacgacatggcgtggtattgtttcggctcatgtccttctt 51
Score = 85.7 bits (43), Expect = 6e-18
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 55 tggatgtgatgtgagccgaaccaatatcactcatgtattcttcattc 101
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 75 tggatgtgatgtgagccgaaccaatatcactcatgtactcttcattc 121
>41988_osa-MIR171h:mirbase
Length = 101
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 62 gatgtgagccgaaccaatatcactcatgtattcttcattc 101
||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 gatgtgagccgaaccaatatcactcatgtattcttcattc 90
>42551_sbi-MIR171f:mirbase
Length = 119
Score = 71.9 bits (36), Expect = 9e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 66 tgagccgaaccaatatcactcatgtattcttcattc 101
||||||||||||||||||||||||||||||||||||
Sbjct: 81 tgagccgaaccaatatcactcatgtattcttcattc 116
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 10 aagacgacatggcgtggtattgtttcggctcatg 43
|||||||||||||||| | |||||||||||||||
Sbjct: 10 aagacgacatggcgtgatgttgtttcggctcatg 43
>41686_vvi-MIR479:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 gagccgaaccaatatcactcatgtattcttc 97
|||||||||||||||||||| ||||| ||||
Sbjct: 64 gagccgaaccaatatcactcttgtatgcttc 94
>41064_ghr-MIR479:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 67 gagccgaaccaatatcactcatgtat 92
|||||||| |||||||||||||||||
Sbjct: 64 gagccgaatcaatatcactcatgtat 89
>41393_ptc-MIR171m:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 15 gacatggcgtggtattgtttcggctcat 42
||||||||||||||||| | ||||||||
Sbjct: 7 gacatggcgtggtattgatccggctcat 34
>41258_csi-MIR479:mirbase
Length = 147
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 67 gagccgaaccaatatcactcatgtattcttcattct 102
|||||||| ||||||||||| ||||| |||| ||||
Sbjct: 98 gagccgaatcaatatcactcttgtatgcttctttct 133
>41232_csi-MIR171b:mirbase
Length = 165
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 67 gagccgaaccaatatcactcatgtattcttcattct 102
|||||||| ||||||||||| ||||| |||| ||||
Sbjct: 123 gagccgaatcaatatcactcttgtatgcttctttct 158
