miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42777_zma-MIR172c:mirbase
Length = 123
Score = 244 bits (123), Expect = 1e-65
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 1 gtgcagcaccaccaagattcacatccaactctcacgcatcttcagtgatgcatgcatgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgcagcaccaccaagattcacatccaactctcacgcatcttcagtgatgcatgcatgct 60
Query: 61 ctgtgatgtctcgcagcagctatatgcatatgtgatgagatgagaatcttgatgatgctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgtgatgtctcgcagcagctatatgcatatgtgatgagatgagaatcttgatgatgctg 120
Query: 121 cat 123
|||
Sbjct: 121 cat 123
>42559_sbi-MIR172c:mirbase
Length = 119
Score = 85.7 bits (43), Expect = 7e-18
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 81 tatatgcatatgtgatgagatgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 tatatgcatatgtgatgagatgagaatcttgatgatgctgcat 119
>42557_sbi-MIR172a:mirbase
Length = 102
Score = 77.8 bits (39), Expect = 2e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 81 tatatgcatatgtgatgagatgagaatcttgatgatgctgcat 123
||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 60 tatatgcgtatgtgatgagatgagaatcttgatgatgctgcat 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 99 gatgagaatcttgatgatgctgca 122
|||| |||||||||||||||||||
Sbjct: 25 gatgtgaatcttgatgatgctgca 2
>42776_zma-MIR172b:mirbase
Length = 126
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 88 atatgtgatgagatgagaatcttgatgatgctgcat 123
|||| |||||||||||||||||||||||||||||||
Sbjct: 91 atatatgatgagatgagaatcttgatgatgctgcat 126
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 gtgcagcaccaccaagattcacatc 25
||||||||||| |||||||||||||
Sbjct: 1 gtgcagcaccatcaagattcacatc 25
>42778_zma-MIR172d:mirbase
Length = 74
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 93 tgatgagatgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||||||||||
Sbjct: 44 tgatgagatgagaatcttgatgatgctgcat 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gtgcagcaccaccaagattcacatcc 26
||||||||||| ||||||||||||||
Sbjct: 1 gtgcagcaccatcaagattcacatcc 26
>41634_vvi-MIR172d:mirbase
Length = 109
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 96 tgagatgagaatcttgatgatgctgcat 123
||||||||||||||||||||||||||||
Sbjct: 72 tgagatgagaatcttgatgatgctgcat 99
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 104 gaatcttgatgatgctgcat 123
||||||||||||||||||||
Sbjct: 28 gaatcttgatgatgctgcat 9
>41993_osa-MIR172d:mirbase
Length = 130
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 99 gatgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||||
Sbjct: 87 gatgagaatcttgatgatgctgcat 111
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 gtgcagcaccaccaagattcacatc 25
||||||||||| |||||||||||||
Sbjct: 20 gtgcagcaccatcaagattcacatc 44
>41767_bdi-MIR172a:mirbase
Length = 153
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gtgcagcaccaccaagattcacatc 25
|||||||||||||||||||||||||
Sbjct: 29 gtgcagcaccaccaagattcacatc 53
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 99 gatgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||||
Sbjct: 95 gatgagaatcttgatgatgctgcat 119
>41725_ata-MIR172:mirbase
Length = 277
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 99 gatgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||||
Sbjct: 205 gatgagaatcttgatgatgctgcat 229
>41631_vvi-MIR172a:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 99 gatgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||||
Sbjct: 33 gatgagaatcttgatgatgctgcat 9
>42775_zma-MIR172a:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 atgagaatcttgatgatgctgcat 123
||||||||||||||||||||||||
Sbjct: 60 atgagaatcttgatgatgctgcat 83
>42560_sbi-MIR172d:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 atgagaatcttgatgatgctgcat 123
||||||||||||||||||||||||
Sbjct: 65 atgagaatcttgatgatgctgcat 88
>41183_aqc-MIR172a:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 atgagaatcttgatgatgctgcat 123
||||||||||||||||||||||||
Sbjct: 95 atgagaatcttgatgatgctgcat 118
>41125_tcc-MIR172b:mirbase
Length = 160
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 atgagaatcttgatgatgctgcat 123
||||||||||||||||||||||||
Sbjct: 117 atgagaatcttgatgatgctgcat 140
>40324_bra-MIR172b:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 atgagaatcttgatgatgctgcat 123
||||||||||||||||||||||||
Sbjct: 79 atgagaatcttgatgatgctgcat 102
>40323_bra-MIR172a:mirbase
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 atgagaatcttgatgatgctgcat 123
||||||||||||||||||||||||
Sbjct: 84 atgagaatcttgatgatgctgcat 107
>40307_bol-MIR172b:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 atgagaatcttgatgatgctgcat 123
||||||||||||||||||||||||
Sbjct: 79 atgagaatcttgatgatgctgcat 102
>40306_bol-MIR172a:mirbase
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 atgagaatcttgatgatgctgcat 123
||||||||||||||||||||||||
Sbjct: 84 atgagaatcttgatgatgctgcat 107
>40064_ath-MIR172b:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 atgagaatcttgatgatgctgcat 123
||||||||||||||||||||||||
Sbjct: 68 atgagaatcttgatgatgctgcat 91
>40063_ath-MIR172a:mirbase
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 atgagaatcttgatgatgctgcat 123
||||||||||||||||||||||||
Sbjct: 75 atgagaatcttgatgatgctgcat 98
>39853_aly-MIR172b:mirbase
Length = 146
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 atgagaatcttgatgatgctgcat 123
||||||||||||||||||||||||
Sbjct: 90 atgagaatcttgatgatgctgcat 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gtgcagcaccaccaagattcacat 24
||||||||||| ||||||||||||
Sbjct: 25 gtgcagcaccatcaagattcacat 48
>39852_aly-MIR172a:mirbase
Length = 149
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 atgagaatcttgatgatgctgcat 123
||||||||||||||||||||||||
Sbjct: 96 atgagaatcttgatgatgctgcat 119
>41990_osa-MIR172a:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 101 tgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcat 99
>41632_vvi-MIR172b:mirbase
Length = 118
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 101 tgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||
Sbjct: 31 tgagaatcttgatgatgctgcat 9
>41543_sly-MIR172b:mirbase
Length = 135
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 101 tgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||
Sbjct: 113 tgagaatcttgatgatgctgcat 135
>41400_ptc-MIR172f:mirbase
Length = 161
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 101 tgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||
Sbjct: 130 tgagaatcttgatgatgctgcat 152
>41397_ptc-MIR172c:mirbase
Length = 128
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 101 tgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||
Sbjct: 97 tgagaatcttgatgatgctgcat 119
>41396_ptc-MIR172b:mirbase
Length = 140
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 101 tgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||
Sbjct: 109 tgagaatcttgatgatgctgcat 131
>41395_ptc-MIR172a:mirbase
Length = 129
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 101 tgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||
Sbjct: 98 tgagaatcttgatgatgctgcat 120
>41184_aqc-MIR172b:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 97 gagatgagaatcttgatgatgctgcat 123
|||||| ||||||||||||||||||||
Sbjct: 80 gagatgggaatcttgatgatgctgcat 106
>41128_tcc-MIR172e:mirbase
Length = 189
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 101 tgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||
Sbjct: 147 tgagaatcttgatgatgctgcat 169
>40463_gma-MIR172f:mirbase
Length = 133
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 101 tgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||
Sbjct: 107 tgagaatcttgatgatgctgcat 129
>40459_gma-MIR172b:mirbase
Length = 153
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 101 tgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||
Sbjct: 112 tgagaatcttgatgatgctgcat 134
>40458_gma-MIR172a:mirbase
Length = 159
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 101 tgagaatcttgatgatgctgcat 123
|||||||||||||||||||||||
Sbjct: 118 tgagaatcttgatgatgctgcat 140
>40065_ath-MIR172c:mirbase
Length = 133
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 100 atgagaatcttgatgatgctgca 122
|||||||||||||||||||||||
Sbjct: 95 atgagaatcttgatgatgctgca 117
>39854_aly-MIR172c:mirbase
Length = 133
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 100 atgagaatcttgatgatgctgca 122
|||||||||||||||||||||||
Sbjct: 95 atgagaatcttgatgatgctgca 117
>41542_sly-MIR172a:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 102 gagaatcttgatgatgctgcat 123
||||||||||||||||||||||
Sbjct: 85 gagaatcttgatgatgctgcat 106
>41233_csi-MIR172a:mirbase
Length = 162
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 tgagaatcttgatgatgctgca 122
||||||||||||||||||||||
Sbjct: 113 tgagaatcttgatgatgctgca 134
>40066_ath-MIR172d:mirbase
Length = 124
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 tgagaatcttgatgatgctgca 122
||||||||||||||||||||||
Sbjct: 86 tgagaatcttgatgatgctgca 107
>39855_aly-MIR172d:mirbase
Length = 163
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 tgagaatcttgatgatgctgca 122
||||||||||||||||||||||
Sbjct: 110 tgagaatcttgatgatgctgca 131
>41399_ptc-MIR172e:mirbase
Length = 133
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 99 gatgagaatcttgatgatgctgcat 123
|||| ||||||||||||||||||||
Sbjct: 100 gatgggaatcttgatgatgctgcat 124
>42779_zma-MIR172e:mirbase
Length = 174
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104 gaatcttgatgatgctgcat 123
||||||||||||||||||||
Sbjct: 136 gaatcttgatgatgctgcat 155
>42558_sbi-MIR172b:mirbase
Length = 170
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104 gaatcttgatgatgctgcat 123
||||||||||||||||||||
Sbjct: 151 gaatcttgatgatgctgcat 170
>41991_osa-MIR172b:mirbase
Length = 238
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104 gaatcttgatgatgctgcat 123
||||||||||||||||||||
Sbjct: 209 gaatcttgatgatgctgcat 228
>41768_bdi-MIR172b:mirbase
Length = 254
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104 gaatcttgatgatgctgcat 123
||||||||||||||||||||
Sbjct: 205 gaatcttgatgatgctgcat 224
>41398_ptc-MIR172d:mirbase
Length = 182
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104 gaatcttgatgatgctgcat 123
||||||||||||||||||||
Sbjct: 154 gaatcttgatgatgctgcat 173
>41126_tcc-MIR172c:mirbase
Length = 163
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104 gaatcttgatgatgctgcat 123
||||||||||||||||||||
Sbjct: 124 gaatcttgatgatgctgcat 143
>40067_ath-MIR172e:mirbase
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104 gaatcttgatgatgctgcat 123
||||||||||||||||||||
Sbjct: 96 gaatcttgatgatgctgcat 115
>39856_aly-MIR172e:mirbase
Length = 133
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104 gaatcttgatgatgctgcat 123
||||||||||||||||||||
Sbjct: 99 gaatcttgatgatgctgcat 118
