miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42843_zma-MIR2118g:mirbase
Length = 145
Score = 287 bits (145), Expect = 1e-78
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 1 gccaggaaaaggatgaaagattctaagagcactaggaataggaacatgaaggaaagcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccaggaaaaggatgaaagattctaagagcactaggaataggaacatgaaggaaagcatt 60
Query: 61 attgtgcatggagatttaggcctgatgttttcctgatgcctcctattcctaaggctctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attgtgcatggagatttaggcctgatgttttcctgatgcctcctattcctaaggctctta 120
Query: 121 ggttctccttccctttccttatggc 145
|||||||||||||||||||||||||
Sbjct: 121 ggttctccttccctttccttatggc 145
>42354_osa-MIR2118j:mirbase
Length = 171
Score = 65.9 bits (33), Expect = 8e-12
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 1 gccaggaaaaggatgaaagattctaagagcactaggaataggaacatgaaggaaagc 57
|||||||| |||| || ||| |||||||||| ||||||| |||||||||||||||||
Sbjct: 6 gccaggaagaggaagagagactctaagagcagtaggaatgggaacatgaaggaaagc 62
Score = 42.1 bits (21), Expect = 1e-04
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 88 ttttcctgatgcctcctattcctaaggctcttaggttctccttcc 132
|||||||||||||||| ||||||| | |||||||| ||| ||||
Sbjct: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcc 151
>42357_osa-MIR2118m:mirbase
Length = 170
Score = 58.0 bits (29), Expect = 2e-09
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 gccaggaaaaggatgaaagattctaagagcactaggaataggaacatgaaggaaagc 57
|||||||| ||||| | ||| |||||||||| ||||||| |||||||||||||||||
Sbjct: 6 gccaggaagaggat-agagactctaagagcagtaggaatgggaacatgaaggaaagc 61
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 88 ttttcctgatgcctcctattccta 111
|||||||||||||||| |||||||
Sbjct: 106 ttttcctgatgcctcccattccta 129
>42841_zma-MIR2118e:mirbase
Length = 143
Score = 56.0 bits (28), Expect = 7e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 85 atgttttcctgatgcctcctattcctaaggctcttaggttctccttcc 132
|||||||||||||| |||| ||||||| || |||||||| ||||||||
Sbjct: 85 atgttttcctgatgtctcccattcctacggttcttaggtgctccttcc 132
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 22 tctaagagcactaggaataggaacatgaaggaaagcat 59
|||||||||| | ||||| | |||||||||||||||||
Sbjct: 26 tctaagagcagtgggaatggaaacatgaaggaaagcat 63
>42350_osa-MIR2118f:mirbase
Length = 169
Score = 54.0 bits (27), Expect = 3e-08
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 86 tgttttcctgatgcctcctattcctaaggctcttaggttctccttccctttcctt 140
|||||||||||||||||| ||||||| | |||| ||| ||||||||| ||||||
Sbjct: 105 tgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
>42361_osa-MIR2118q:mirbase
Length = 177
Score = 52.0 bits (26), Expect = 1e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 87 gttttcctgatgcctcctattcctaaggctcttaggttctccttcc 132
||||||| ||||||||||||||||| | |||||||| ||||||||
Sbjct: 115 gttttcccgatgcctcctattcctaccgatcttaggtactccttcc 160
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 22 tctaagagcactaggaataggaacatgaaggaaagc 57
||||||||| | |||||||||||||| ||||||||
Sbjct: 30 tctaagagcgatgggaataggaacatggaggaaagc 65
>42355_osa-MIR2118k:mirbase
Length = 177
Score = 50.1 bits (25), Expect = 5e-07
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 85 atgttttcctgatgcctcctattcctaaggctcttaggttctccttccctttccttatgg 144
|||||||||||||||||| ||||||| | |||||||| |||||||| |||||| |||
Sbjct: 113 atgttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttttgg 172
Query: 145 c 145
|
Sbjct: 173 c 173
>42347_osa-MIR2118c:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 87 gttttcctgatgcctcctattccta 111
||||||| |||||||||||||||||
Sbjct: 73 gttttcccgatgcctcctattccta 97
>42352_osa-MIR2118h:mirbase
Length = 157
Score = 40.1 bits (20), Expect = 4e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 85 atgttttcctgatgcctcctattcctaaggctcttaggttctccttcc 132
|||||||||||||||||| ||||||| || ||| ||| ||||||||
Sbjct: 104 atgttttcctgatgcctctcattcctatggttctagggtgctccttcc 151
