miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32979_rno-mir-675:mirbase
Length = 84
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1 ggcccatggactggtgcggaaagggcccacagtggacttggtgcactgtatgccctaacc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggcccagggactggtgcggaaagggcccacagtggacttggtgcactgtatgccctaacc 63
Query: 61 gctcagtccctgggt 75
|||||||||||||||
Sbjct: 64 gctcagtccctgggt 78
>32290_mmu-mir-675:mirbase
Length = 84
Score = 133 bits (67), Expect = 2e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 1 ggcccatggactggtgcggaaagggcccacagtggacttggtgcactgtatgccctaacc 60
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4 ggcccagggactggtgcggaaagggcccacagtggacttggtacactgtatgccctaacc 63
Query: 61 gctcagtccctgggt 75
|||||||||||||||
Sbjct: 64 gctcagtccctgggt 78
>32291_mmu-mir-675:mirbase
Length = 84
Score = 133 bits (67), Expect = 2e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 1 ggcccatggactggtgcggaaagggcccacagtggacttggtgcactgtatgccctaacc 60
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4 ggcccagggactggtgcggaaagggcccacagtggacttggtacactgtatgccctaacc 63
Query: 61 gctcagtccctgggt 75
|||||||||||||||
Sbjct: 64 gctcagtccctgggt 78
>28110_mml-mir-675:mirbase
Length = 73
Score = 89.7 bits (45), Expect = 3e-19
Identities = 61/65 (93%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 11 ctggtgcggaaagggcccacagtggacttggtg-cactgtatgccctaaccgctcagtcc 69
|||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||| ||
Sbjct: 9 ctggtgcggagagggcccacagtggacttggtgacactgtatgccctcaccgctcagccc 68
Query: 70 ctggg 74
|||||
Sbjct: 69 ctggg 73
>31236_ppy-mir-675b:mirbase
Length = 95
Score = 85.7 bits (43), Expect = 4e-18
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 ggcccatggactggtgcggaaagggcccacagtggacttggtg-cactgtatgccctaac 59
|||||| || |||||||||| |||||||||||||||||||||| | ||||||||||| ||
Sbjct: 12 ggcccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcac 71
Query: 60 cgctcagtccctggg 74
||||||| |||||||
Sbjct: 72 cgctcagcccctggg 86
>28990_hsa-mir-675:mirbase
Length = 73
Score = 81.8 bits (41), Expect = 6e-17
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 11 ctggtgcggaaagggcccacagtggacttggtg-cactgtatgccctaaccgctcagtcc 69
|||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||| ||
Sbjct: 9 ctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccgctcagccc 68
Query: 70 ctggg 74
|||||
Sbjct: 69 ctggg 73
>31235_ppy-mir-675a:mirbase
Length = 73
Score = 81.8 bits (41), Expect = 6e-17
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 11 ctggtgcggaaagggcccacagtggacttggtg-cactgtatgccctaaccgctcagtcc 69
|||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||| ||
Sbjct: 9 ctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccgctcagccc 68
Query: 70 ctggg 74
|||||
Sbjct: 69 ctggg 73
>27256_eca-mir-675:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 11 ctggtgcggaaagggcccacagtggacttggtg-cactgtatgccctaaccgctcagtcc 69
|||| ||||| ||||||||||||| ||| ||| ||||||||||| | ||||||||| ||
Sbjct: 9 ctggcgcggagagggcccacagtgcactcagtgacactgtatgccttcaccgctcagccc 68
Query: 70 ctggg 74
|||||
Sbjct: 69 ctggg 73
