miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32979_rno-mir-675:mirbase
Length = 84
Score = 133 bits (67), Expect = 2e-32
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 1 gcccanggactggtgcggaaagggcccacagtggacttggtgcactgtatgccctaaccg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gcccagggactggtgcggaaagggcccacagtggacttggtgcactgtatgccctaaccg 64
Query: 61 ctcantccctggg 73
|||| ||||||||
Sbjct: 65 ctcagtccctggg 77
>32290_mmu-mir-675:mirbase
Length = 84
Score = 125 bits (63), Expect = 4e-30
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 1 gcccanggactggtgcggaaagggcccacagtggacttggtgcactgtatgccctaaccg 60
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5 gcccagggactggtgcggaaagggcccacagtggacttggtacactgtatgccctaaccg 64
Query: 61 ctcantccctggg 73
|||| ||||||||
Sbjct: 65 ctcagtccctggg 77
>32291_mmu-mir-675:mirbase
Length = 84
Score = 125 bits (63), Expect = 4e-30
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 1 gcccanggactggtgcggaaagggcccacagtggacttggtgcactgtatgccctaaccg 60
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5 gcccagggactggtgcggaaagggcccacagtggacttggtacactgtatgccctaaccg 64
Query: 61 ctcantccctggg 73
|||| ||||||||
Sbjct: 65 ctcagtccctggg 77
>28110_mml-mir-675:mirbase
Length = 73
Score = 85.7 bits (43), Expect = 4e-18
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 2 cccanggactggtgcggaaagggcccacagtggacttggtg-cactgtatgccctaaccg 60
|||| || |||||||||| |||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 1 cccagggtctggtgcggagagggcccacagtggacttggtgacactgtatgccctcaccg 60
Query: 61 ctcantccctggg 73
|||| |||||||
Sbjct: 61 ctcagcccctggg 73
>31236_ppy-mir-675b:mirbase
Length = 95
Score = 79.8 bits (40), Expect = 2e-16
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gcccanggactggtgcggaaagggcccacagtggacttggtg-cactgtatgccctaacc 59
||||| || |||||||||| |||||||||||||||||||||| | ||||||||||| |||
Sbjct: 13 gcccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcacc 72
Query: 60 gctcantccctggg 73
||||| |||||||
Sbjct: 73 gctcagcccctggg 86
>28990_hsa-mir-675:mirbase
Length = 73
Score = 77.8 bits (39), Expect = 9e-16
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 2 cccanggactggtgcggaaagggcccacagtggacttggtg-cactgtatgccctaaccg 60
|||| || |||||||||| |||||||||||||||||||||| | ||||||||||| ||||
Sbjct: 1 cccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccg 60
Query: 61 ctcantccctggg 73
|||| |||||||
Sbjct: 61 ctcagcccctggg 73
>31235_ppy-mir-675a:mirbase
Length = 73
Score = 77.8 bits (39), Expect = 9e-16
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 2 cccanggactggtgcggaaagggcccacagtggacttggtg-cactgtatgccctaaccg 60
|||| || |||||||||| |||||||||||||||||||||| | ||||||||||| ||||
Sbjct: 1 cccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccg 60
Query: 61 ctcantccctggg 73
|||| |||||||
Sbjct: 61 ctcagcccctggg 73
>27256_eca-mir-675:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 61/73 (83%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 2 cccanggactggtgcggaaagggcccacagtggacttggtg-cactgtatgccctaaccg 60
|||| || |||| ||||| ||||||||||||| ||| ||| ||||||||||| | ||||
Sbjct: 1 cccaggggctggcgcggagagggcccacagtgcactcagtgacactgtatgccttcaccg 60
Query: 61 ctcantccctggg 73
|||| |||||||
Sbjct: 61 ctcagcccctggg 73
