miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33033_rno-mir-3546:mirbase
Length = 116
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 1 tgcttacttcctttgacgggtgagcttttggcccgggttatacctgactctcacgtataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 tgcttacttcctttgacgggtgagcttttggcccgggttatacctgactctcacgtataa 47
Query: 61 gacgagcaaaaagcttgttggtcagaggagctatcg 96
||||||||||||||||||||||||||||||||||||
Sbjct: 46 gacgagcaaaaagcttgttggtcagaggagctatcg 11
>32798_rno-mir-208:mirbase
Length = 83
Score = 165 bits (83), Expect = 7e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 8 ttcctttgacgggtgagcttttggcccgggttatacctgactctcacgtataagacgagc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcctttgacgggtgagcttttggcccgggttatacctgactctcacgtataagacgagc 60
Query: 68 aaaaagcttgttggtcagaggag 90
|||||||||||||||||||||||
Sbjct: 61 aaaaagcttgttggtcagaggag 83
>31934_mmu-mir-208a:mirbase
Length = 83
Score = 157 bits (79), Expect = 2e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 8 ttcctttgacgggtgagcttttggcccgggttatacctgactctcacgtataagacgagc 67
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ttcctttgacgggtgagcttttggcccgggttatacctgacactcacgtataagacgagc 60
Query: 68 aaaaagcttgttggtcagaggag 90
|||||||||||||||||||||||
Sbjct: 61 aaaaagcttgttggtcagaggag 83
>31935_mmu-mir-208a:mirbase
Length = 83
Score = 157 bits (79), Expect = 2e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 8 ttcctttgacgggtgagcttttggcccgggttatacctgactctcacgtataagacgagc 67
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ttcctttgacgggtgagcttttggcccgggttatacctgacactcacgtataagacgagc 60
Query: 68 aaaaagcttgttggtcagaggag 90
|||||||||||||||||||||||
Sbjct: 61 aaaaagcttgttggtcagaggag 83
>27093_eca-mir-208a:mirbase
Length = 83
Score = 133 bits (67), Expect = 3e-32
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 8 ttcctttgacgggtgagcttttggcccgggttatacctgactctcacgtataagacgagc 67
||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ttcctgtgacgggcgagcttttggcccgggttatacctgatgctcacgtataagacgagc 60
Query: 68 aaaaagcttgttggtcagaggag 90
|||||||||||||||||||||||
Sbjct: 61 aaaaagcttgttggtcagaggag 83
>28526_hsa-mir-208a:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 14 tgacgggtgagcttttggcccgggttatacctgactctcacgtataagacgagcaaaaag 73
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tgacgggcgagcttttggcccgggttatacctgatgctcacgtataagacgagcaaaaag 60
Query: 74 cttgttggtca 84
|||||||||||
Sbjct: 61 cttgttggtca 71
>33285_bta-mir-208a:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 14 tgacgggtgagcttttggcccgggttatacctgactctcacgtataagacgagcaaaaag 73
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tgacgggcgagcttttggcccgggttatacctgatgctcacgtataagacgagcaaaaag 60
Query: 74 cttgttggtca 84
|||||||||||
Sbjct: 61 cttgttggtca 71
>30285_ptr-mir-208a:mirbase
Length = 70
Score = 115 bits (58), Expect = 6e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 14 tgacgggtgagcttttggcccgggttatacctgactctcacgtataagacgagcaaaaag 73
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tgacgggcgagcttttggcccgggttatacctgatgctcacgtataagacgagcaaaaag 60
Query: 74 cttgttggtc 83
||||||||||
Sbjct: 61 cttgttggtc 70
>27804_mml-mir-208a:mirbase
Length = 71
Score = 109 bits (55), Expect = 4e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 22 gagcttttggcccgggttatacctgactctcacgtataagacgagcaaaaagcttgttgg 81
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 9 gagcttttggcccgggttatacctgatgctcacgtataagacgagcaaaaagcttgttgg 68
Query: 82 tca 84
|||
Sbjct: 69 tca 71
>30903_ppy-mir-208a:mirbase
Length = 71
Score = 109 bits (55), Expect = 4e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 22 gagcttttggcccgggttatacctgactctcacgtataagacgagcaaaaagcttgttgg 81
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 9 gagcttttggcccgggttatacctgatgctcacgtataagacgagcaaaaagcttgttgg 68
Query: 82 tca 84
|||
Sbjct: 69 tca 71
>26768_cfa-mir-208a:mirbase
Length = 69
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 21 tgagcttttggcccgggttatacctgactctcacgtataagacgagcaaaaagcttgttg 80
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6 tgagcttttggctcgggttatacctgatgctcacgtataagacgagcaaaaagcttgttg 65
Query: 81 gtca 84
||||
Sbjct: 66 gtca 69
>31533_oan-mir-208:mirbase
Length = 111
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 23 agcttttggcccgggttatacctgactctcacgtataagacgagcaaaaagcttgttggt 82
|||||||||||| | ||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 35 agcttttggcccagattatacctgacattcccgtataagacgagcaaaaagcttgttggt 94
Query: 83 cagaggagc 91
|||||||||
Sbjct: 95 cagaggagc 103
>27425_mdo-mir-208:mirbase
Length = 77
Score = 71.9 bits (36), Expect = 8e-14
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 8 ttcctttgacgggtgagcttttggcccgggttatacctgactctcacgtataagacgagc 67
||||| |||| ||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct: 1 ttcctgtgacaggtgagcttttggtccgggttatacctgatgcatgtgtataagacgagc 60
Query: 68 aaaaagcttgttggtc 83
|||||||| |||||||
Sbjct: 61 aaaaagctcgttggtc 76
>25830_xtr-mir-208:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 gtataagacgagcaaaaagcttgtt 79
|||||||||||||| ||||||||||
Sbjct: 48 gtataagacgagcataaagcttgtt 72
