miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33060_rno-mir-3567:mirbase
Length = 118
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 1 tgtctttgccggtgacagcacattattacttttggtacgcgctgtgacacttcaaactcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 tgtctttgccggtgacagcacattattacttttggtacgcgctgtgacacttcaaactcg 47
Query: 61 taccgtgagtaataatgcgtggtcaacagcgcagca 96
||||||||||||||||||||||||||||||||||||
Sbjct: 46 taccgtgagtaataatgcgtggtcaacagcgcagca 11
>32725_rno-mir-126:mirbase
Length = 73
Score = 145 bits (73), Expect = 7e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 13 tgacagcacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacagcacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
Query: 73 taatgcgtggtca 85
|||||||||||||
Sbjct: 61 taatgcgtggtca 73
>31847_mmu-mir-126:mirbase
Length = 73
Score = 137 bits (69), Expect = 2e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 13 tgacagcacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacagcacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
Query: 73 taatgcgtggtca 85
||||||| |||||
Sbjct: 61 taatgcgcggtca 73
>31848_mmu-mir-126:mirbase
Length = 73
Score = 137 bits (69), Expect = 2e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 13 tgacagcacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacagcacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
Query: 73 taatgcgtggtca 85
||||||| |||||
Sbjct: 61 taatgcgcggtca 73
>25944_gga-mir-126:mirbase
Length = 84
Score = 121 bits (61), Expect = 1e-28
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 11 ggtgacagcacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagt 70
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggtgacggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagt 63
Query: 71 aataatgcg 79
|||||||||
Sbjct: 64 aataatgcg 72
>26455_tgu-mir-126:mirbase
Length = 132
Score = 121 bits (61), Expect = 1e-28
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 11 ggtgacagcacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagt 70
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 ggtgacggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagt 113
Query: 71 aataatgcg 79
|||||||||
Sbjct: 114 aataatgcg 122
>27013_eca-mir-126:mirbase
Length = 73
Score = 119 bits (60), Expect = 4e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 20 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
>27014_eca-mir-126:mirbase
Length = 73
Score = 119 bits (60), Expect = 4e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 20 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
>27721_mml-mir-126:mirbase
Length = 85
Score = 119 bits (60), Expect = 4e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 20 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 73
>28434_hsa-mir-126:mirbase
Length = 85
Score = 119 bits (60), Expect = 4e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 20 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 73
>30212_ptr-mir-126:mirbase
Length = 84
Score = 119 bits (60), Expect = 4e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 20 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 72
>30821_ppy-mir-126:mirbase
Length = 81
Score = 119 bits (60), Expect = 4e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 20 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 73
>33204_bta-mir-126:mirbase
Length = 73
Score = 119 bits (60), Expect = 4e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 20 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
>33973_ssc-mir-126:mirbase
Length = 73
Score = 119 bits (60), Expect = 4e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 20 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
>26692_cfa-mir-126:mirbase
Length = 59
Score = 117 bits (59), Expect = 1e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 21 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 79
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 59
>31481_oan-mir-126:mirbase
Length = 110
Score = 115 bits (58), Expect = 6e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 21 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgt 80
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 29 cattattacttttggtacgcgctgtgacgcttcaaactcgtaccgtgagtaataatgcgt 88
Query: 81 gg 82
||
Sbjct: 89 gg 90
>27377_mdo-mir-126:mirbase
Length = 69
Score = 109 bits (55), Expect = 4e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 21 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 79
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5 cattattacttttggtacgcgctgtgacacatcaaactcgtaccgtgagtaataatgcg 63
>25767_xtr-mir-126:mirbase
Length = 69
Score = 101 bits (51), Expect = 9e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 21 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 79
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 8 cattattacttttggtacgcgctgtgtcacatcaaactcgtaccgtgagtaataatgcg 66
>34590_fru-mir-126:mirbase
Length = 63
Score = 75.8 bits (38), Expect = 5e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 21 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 78
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
>34737_tni-mir-126:mirbase
Length = 63
Score = 75.8 bits (38), Expect = 5e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 21 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 78
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
>34284_dre-mir-126b:mirbase
Length = 103
Score = 67.9 bits (34), Expect = 1e-12
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 21 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaata 74
||||||||||||||||||||||| || |||| ||||||||||||||||||||
Sbjct: 23 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaata 76
>34283_dre-mir-126a:mirbase
Length = 101
Score = 61.9 bits (31), Expect = 8e-11
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 21 cattattacttttggtacgcgctgtgacact-tcaaactcgtaccgtgagtaataatgc 78
||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct: 26 cattattacttttggtacgcgctaggccagactcaaactcgtaccgtgagtaataatgc 84
