miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33091_rno-mir-3591:mirbase
Length = 109
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 1 agactctccttagcagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 agactctccttagcagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaac 44
Query: 61 gccatcatcacactaaacagctactgctaggctatcc 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 43 gccatcatcacactaaacagctactgctaggctatcc 7
>32716_rno-mir-122:mirbase
Length = 85
Score = 168 bits (85), Expect = 5e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 8 ccttagcagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatca 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccttagcagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatca 60
Query: 68 tcacactaaacagctactgctaggc 92
|||||||||||||||||||||||||
Sbjct: 61 tcacactaaacagctactgctaggc 85
>28426_hsa-mir-122:mirbase
Length = 85
Score = 121 bits (61), Expect = 1e-28
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 8 ccttagcagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatca 67
||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct: 1 ccttagcagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccatta 60
Query: 68 tcacactaaacagctactgctaggc 92
|||||||||| ||||||||||||||
Sbjct: 61 tcacactaaatagctactgctaggc 85
>30814_ppy-mir-122:mirbase
Length = 85
Score = 121 bits (61), Expect = 1e-28
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 8 ccttagcagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatca 67
||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct: 1 ccttagcagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccatta 60
Query: 68 tcacactaaacagctactgctaggc 92
|||||||||| ||||||||||||||
Sbjct: 61 tcacactaaatagctactgctaggc 85
>33197_bta-mir-122:mirbase
Length = 85
Score = 121 bits (61), Expect = 1e-28
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 8 ccttagcagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatca 67
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 1 ccttagcagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccatta 60
Query: 68 tcacactaaacagctactgctaggc 92
|||||||||| |||||||| |||||
Sbjct: 61 tcacactaaatagctactgttaggc 85
>33967_ssc-mir-122:mirbase
Length = 85
Score = 121 bits (61), Expect = 1e-28
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 8 ccttagcagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatca 67
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 1 ccttagcagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccatta 60
Query: 68 tcacactaaacagctactgctaggc 92
|||||||||| |||||||| |||||
Sbjct: 61 tcacactaaatagctactgttaggc 85
>30207_ptr-mir-122:mirbase
Length = 84
Score = 119 bits (60), Expect = 4e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 9 cttagcagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcat 68
|||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||
Sbjct: 1 cttagcagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattat 60
Query: 69 cacactaaacagctactgctaggc 92
||||||||| ||||||||||||||
Sbjct: 61 cacactaaatagctactgctaggc 84
>27714_mml-mir-122a:mirbase
Length = 85
Score = 113 bits (57), Expect = 2e-26
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 8 ccttagcagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatca 67
||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct: 1 ccttagcagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccatta 60
Query: 68 tcacactaaacagctactgctaggc 92
|||||||||| ||||||| ||||||
Sbjct: 61 tcacactaaatagctactactaggc 85
>31837_mmu-mir-122:mirbase
Length = 66
Score = 99.6 bits (50), Expect = 4e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 17 agctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacactaa 76
|||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtccaaaccatcaaacgccattatcacactaa 60
Query: 77 acagct 82
| ||||
Sbjct: 61 atagct 66
>25937_gga-mir-122-1:mirbase
Length = 77
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 14 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 73
||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
Query: 74 taaacagctactg 86
|||| ||||||||
Sbjct: 61 taaatagctactg 73
>25938_gga-mir-122-2:mirbase
Length = 77
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 14 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 73
||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1 cagagctatggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
Query: 74 taaacagctactg 86
|||| ||||||||
Sbjct: 61 taaatagctactg 73
>29379_hsa-mir-3591:mirbase
Length = 73
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/73 (91%)
Strand = Plus / Minus
Query: 14 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 73
||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||
Sbjct: 73 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 14
Query: 74 taaacagctactg 86
|||| ||||||||
Sbjct: 13 taaatagctactg 1
>29380_hsa-mir-3591:mirbase
Length = 73
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/73 (91%)
Strand = Plus / Minus
Query: 14 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 73
||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||
Sbjct: 73 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 14
Query: 74 taaacagctactg 86
|||| ||||||||
Sbjct: 13 taaatagctactg 1
>27006_eca-mir-122:mirbase
Length = 66
Score = 91.7 bits (46), Expect = 9e-20
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 17 agctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacactaa 76
|||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaa 60
Query: 77 acagct 82
| ||||
Sbjct: 61 atagct 66
>27371_mdo-mir-122:mirbase
Length = 74
Score = 89.7 bits (45), Expect = 3e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 14 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 73
||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1 cagagctatggagtgtgacaatggtgtttgtgtccagtctatcaaacgccattatcacac 60
Query: 74 taaacagctactg 86
|||| ||||||||
Sbjct: 61 taaatagctactg 73
>31478_oan-mir-122:mirbase
Length = 111
Score = 89.7 bits (45), Expect = 3e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 14 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 73
||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 21 cagagctgtggagtgtgacaatggtgtttgtgtccagtctatcaaacgccattatcacac 80
Query: 74 taaacagctactg 86
|||| ||||||||
Sbjct: 81 taaatagctactg 93
>26685_cfa-mir-122:mirbase
Length = 58
Score = 87.7 bits (44), Expect = 1e-18
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 22 tggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacactaaa 77
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 1 tggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaaa 56
>26449_tgu-mir-122:mirbase
Length = 72
Score = 71.9 bits (36), Expect = 8e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 14 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 73
||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 3 cagagctgtggagtgtgacaatggtgtttgtgtccatct-atcaaacgccattatcacac 61
Query: 74 taaa 77
||||
Sbjct: 62 taaa 65
>25762_xtr-mir-122:mirbase
Length = 69
Score = 65.9 bits (33), Expect = 5e-12
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 16 gagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacacta 75
||||| |||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct: 1 gagctatggagtgtgacaatggtgtttgtgtcagagctatcaaacgccattatcacacta 60
Query: 76 a 76
|
Sbjct: 61 a 61
>34731_tni-mir-122:mirbase
Length = 66
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 17 agctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacactaa 76
|||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtcctttctttcaaacgccattatcacactaa 60
Query: 77 acagct 82
| ||||
Sbjct: 61 atagct 66
>34270_dre-mir-122:mirbase
Length = 76
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 14 cagagctctggagtgtgacaatggtgtttgt 44
||||||| |||||||||||||||||||||||
Sbjct: 3 cagagctgtggagtgtgacaatggtgtttgt 33
>34584_fru-mir-122:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 7e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 17 agctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacactaa 76
|||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||
Sbjct: 1 agctatggagtgtgacaatggtgtttgtttcctttctttcaaacgccattatcacactaa 60
Query: 77 acagct 82
| ||||
Sbjct: 61 atagct 66
>34199_dre-mir-10b-2:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 tttgtgtccaaaacatcaaa 59
||||||||||||||||||||
Sbjct: 33 tttgtgtccaaaacatcaaa 52
