miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32798_rno-mir-208:mirbase
Length = 83
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 1 ctctgaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 ctctgaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaa 21
Query: 61 aagctcacccgtca 74
||||||||||||||
Sbjct: 20 aagctcacccgtca 7
>33033_rno-mir-3546:mirbase
Length = 116
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 ctctgaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 ctctgaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaa 79
Query: 61 aagctcacccgtca 74
||||||||||||||
Sbjct: 80 aagctcacccgtca 93
>31934_mmu-mir-208a:mirbase
Length = 83
Score = 139 bits (70), Expect = 3e-34
Identities = 73/74 (98%)
Strand = Plus / Minus
Query: 1 ctctgaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaa 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 80 ctctgaccaacaagctttttgctcgtcttatacgtgagtgtcaggtataacccgggccaa 21
Query: 61 aagctcacccgtca 74
||||||||||||||
Sbjct: 20 aagctcacccgtca 7
>31935_mmu-mir-208a:mirbase
Length = 83
Score = 139 bits (70), Expect = 3e-34
Identities = 73/74 (98%)
Strand = Plus / Minus
Query: 1 ctctgaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaa 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 80 ctctgaccaacaagctttttgctcgtcttatacgtgagtgtcaggtataacccgggccaa 21
Query: 61 aagctcacccgtca 74
||||||||||||||
Sbjct: 20 aagctcacccgtca 7
>27093_eca-mir-208a:mirbase
Length = 83
Score = 123 bits (62), Expect = 2e-29
Identities = 71/74 (95%)
Strand = Plus / Minus
Query: 1 ctctgaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaa 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 80 ctctgaccaacaagctttttgctcgtcttatacgtgagcatcaggtataacccgggccaa 21
Query: 61 aagctcacccgtca 74
|||||| |||||||
Sbjct: 20 aagctcgcccgtca 7
>28526_hsa-mir-208a:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Minus
Query: 4 tgaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaaaag 63
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 71 tgaccaacaagctttttgctcgtcttatacgtgagcatcaggtataacccgggccaaaag 12
Query: 64 ctcacccgtca 74
||| |||||||
Sbjct: 11 ctcgcccgtca 1
>33285_bta-mir-208a:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Minus
Query: 4 tgaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaaaag 63
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 71 tgaccaacaagctttttgctcgtcttatacgtgagcatcaggtataacccgggccaaaag 12
Query: 64 ctcacccgtca 74
||| |||||||
Sbjct: 11 ctcgcccgtca 1
>30285_ptr-mir-208a:mirbase
Length = 70
Score = 115 bits (58), Expect = 4e-27
Identities = 67/70 (95%)
Strand = Plus / Minus
Query: 5 gaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaaaagc 64
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 70 gaccaacaagctttttgctcgtcttatacgtgagcatcaggtataacccgggccaaaagc 11
Query: 65 tcacccgtca 74
|| |||||||
Sbjct: 10 tcgcccgtca 1
>27804_mml-mir-208a:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 61/63 (96%)
Strand = Plus / Minus
Query: 4 tgaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaaaag 63
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 71 tgaccaacaagctttttgctcgtcttatacgtgagcatcaggtataacccgggccaaaag 12
Query: 64 ctc 66
|||
Sbjct: 11 ctc 9
>30903_ppy-mir-208a:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 61/63 (96%)
Strand = Plus / Minus
Query: 4 tgaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaaaag 63
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 71 tgaccaacaagctttttgctcgtcttatacgtgagcatcaggtataacccgggccaaaag 12
Query: 64 ctc 66
|||
Sbjct: 11 ctc 9
>26768_cfa-mir-208a:mirbase
Length = 69
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Minus
Query: 4 tgaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaaaag 63
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 69 tgaccaacaagctttttgctcgtcttatacgtgagcatcaggtataacccgagccaaaag 10
Query: 64 ctca 67
||||
Sbjct: 9 ctca 6
>31533_oan-mir-208:mirbase
Length = 111
Score = 89.7 bits (45), Expect = 2e-19
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 1 ctctgaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaa 60
|||||||||||||||||||||||||||||||||| || ||||||||||| | |||||||
Sbjct: 99 ctctgaccaacaagctttttgctcgtcttatacgggaatgtcaggtataatctgggccaa 40
Query: 61 aagct 65
|||||
Sbjct: 39 aagct 35
>27425_mdo-mir-208:mirbase
Length = 77
Score = 67.9 bits (34), Expect = 9e-13
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 5 gaccaacaagctttttgctcgtcttatacgtgagagtcaggtataacccgggccaaaagc 64
||||||| ||||||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 76 gaccaacgagctttttgctcgtcttatacacatgcatcaggtataacccggaccaaaagc 17
Query: 65 tcacccgtca 74
||||| ||||
Sbjct: 16 tcacctgtca 7
>25830_xtr-mir-208:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 9 aacaagctttttgctcgtcttatac 33
|||||||||| ||||||||||||||
Sbjct: 72 aacaagctttatgctcgtcttatac 48
