miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42642_tae-MIR319:mirbase
Length = 211
Score = 410 bits (207), Expect = e-115
Identities = 207/207 (100%)
Strand = Plus / Minus
Query: 1 agatgagggagctcccttcagtccaagcatggaggaggaaagagagaacaatctcccgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 agatgagggagctcccttcagtccaagcatggaggaggaaagagagaacaatctcccgct 150
Query: 61 gcattcgctcattcgcacagtacatattgtaacatactggtatgccctggactagtctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gcattcgctcattcgcacagtacatattgtaacatactggtatgccctggactagtctca 90
Query: 121 tatctactgtgtgctcgagtgaatgagtcggcagctcgttcaatccccgctacctcccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 tatctactgtgtgctcgagtgaatgagtcggcagctcgttcaatccccgctacctcccat 30
Query: 181 gagtggactgaagtgagctccctcaaa 207
|||||||||||||||||||||||||||
Sbjct: 29 gagtggactgaagtgagctccctcaaa 3
>41770_bdi-MIR319:mirbase
Length = 280
Score = 184 bits (93), Expect = 2e-47
Identities = 188/220 (85%), Gaps = 16/220 (7%)
Strand = Plus / Minus
Query: 4 tgagggagctcccttcagtccaagcatggaggaggaaagagagaacaatctcccgctgca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 248 tgagggagctcccttcagtccaagcatggaggaggaaagagagaacaatctcccgcttca 189
Query: 64 ttcgctcattcgcacagtacatattgtaacatactgg-------tatgccctggactagt 116
||||||||||| ||||||| ||||| | || ||| | |||||| |||| ||||
Sbjct: 188 ttcgctcattcacacagtagatattattccacactagtagatattatgccttggattagt 129
Query: 117 ct-ca--------tatctactgtgtgctcgagtgaatgagtcggcagctcgttcaatccc 167
|| || |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 128 ctgcatatccagttatccactgtgtgttcgagtgaatgagtcggcagctcgttcaatccc 69
Query: 168 cgctacctcccatgagtggactgaagtgagctccctcaaa 207
|||||||||||||| |||||| |||| ||||||||||||
Sbjct: 68 cgctacctcccatgggtggacagaagaaagctccctcaaa 29
>40070_ath-MIR319b:mirbase
Length = 172
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagcat 30
|||||||||||||||||||||||||
Sbjct: 172 agggagctcccttcagtccaagcat 148
>39859_aly-MIR319b:mirbase
Length = 246
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagcat 30
|||||||||||||||||||||||||
Sbjct: 211 agggagctcccttcagtccaagcat 187
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagca 29
||||||||||||||||||||||||
Sbjct: 182 agggagctcccttcagtccaagca 159
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagca 29
||||||||||||||||||||||||
Sbjct: 171 agggagctcccttcagtccaagca 148
Score = 44.1 bits (22), Expect = 4e-05
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 140 tgaatgagtcggcagctcgttcaatccccgctacctcccatgagtggactgaag 193
||||||||||||||||| |||||| || || || ||||||||||||||||||
Sbjct: 72 tgaatgagtcggcagctaattcaat-cctactgccacccatgagtggactgaag 20
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagca 29
||||||||||||||||||||||||
Sbjct: 185 agggagctcccttcagtccaagca 162
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagca 29
||||||||||||||||||||||||
Sbjct: 188 agggagctcccttcagtccaagca 165
>40703_mtr-MIR319:mirbase
Length = 207
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagca 29
||||||||||||||||||||||||
Sbjct: 189 agggagctcccttcagtccaagca 166
>40369_rco-MIR319c:mirbase
Length = 188
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagca 29
||||||||||||||||||||||||
Sbjct: 183 agggagctcccttcagtccaagca 160
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 176 cccatgagtggactgaagtgagctc 200
|||||||||||||||||| ||||||
Sbjct: 31 cccatgagtggactgaagagagctc 7
>41282_ctr-MIR319:mirbase
Length = 186
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 7 gggagctcccttcagtccaagca 29
|||||||||||||||||||||||
Sbjct: 176 gggagctcccttcagtccaagca 154
>40368_rco-MIR319b:mirbase
Length = 179
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 5 gagggagctcccttcagtccaag 27
|||||||||||||||||||||||
Sbjct: 175 gagggagctcccttcagtccaag 153
>41635_vvi-MIR319b:mirbase
Length = 194
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaag 27
||||||||||||||||||||||
Sbjct: 183 agggagctcccttcagtccaag 162
>41410_ptc-MIR319g:mirbase
Length = 204
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 ggagctcccttcagtccaagca 29
||||||||||||||||||||||
Sbjct: 194 ggagctcccttcagtccaagca 173
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 131 gtgctcgagtgaatgagtcggcagctcgttcaa 163
||||| || ||||||||||||||||| ||||||
Sbjct: 84 gtgcttgaatgaatgagtcggcagctagttcaa 52
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 ggagctcccttcagtccaagca 29
||||||||||||||||||||||
Sbjct: 192 ggagctcccttcagtccaagca 171
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 44.1 bits (22), Expect = 4e-05
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 140 tgaatgagtcggcagctcgttcaatccccgctacctcccatgagtggactgaag 193
||||||||||||||||| || ||||| ||||| ||||||||||||||||||
Sbjct: 72 tgaatgagtcggcagctaattaaatccta-ctaccacccatgagtggactgaag 20
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaag 27
||||||||||||||||||||||
Sbjct: 180 agggagctcccttcagtccaag 159
>41185_aqc-MIR319:mirbase
Length = 177
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaag 27
||||||||||||||||||||||
Sbjct: 175 agggagctcccttcagtccaag 154
>40704_mtr-MIR319b:mirbase
Length = 180
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaag 27
||||||||||||||||||||||
Sbjct: 176 agggagctcccttcagtccaag 155
>40465_gma-MIR319b:mirbase
Length = 208
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaag 27
||||||||||||||||||||||
Sbjct: 190 agggagctcccttcagtccaag 169
>40464_gma-MIR319a:mirbase
Length = 207
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaag 27
||||||||||||||||||||||
Sbjct: 189 agggagctcccttcagtccaag 168
>40367_rco-MIR319a:mirbase
Length = 211
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaag 27
||||||||||||||||||||||
Sbjct: 206 agggagctcccttcagtccaag 185
>40069_ath-MIR319a:mirbase
Length = 176
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 gagggagctcccttcagtccaa 26
||||||||||||||||||||||
Sbjct: 175 gagggagctcccttcagtccaa 154
>39858_aly-MIR319a:mirbase
Length = 221
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 gagggagctcccttcagtccaa 26
||||||||||||||||||||||
Sbjct: 198 gagggagctcccttcagtccaa 177
>39740_smo-MIR319:mirbase
Length = 215
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaag 27
||||||||||||||||||||||
Sbjct: 206 agggagctcccttcagtccaag 185
>42783_zma-MIR319d:mirbase
Length = 212
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 5 gagggagctcccttcagtccaagca 29
|||||||| ||||||||||||||||
Sbjct: 195 gagggagcacccttcagtccaagca 171
>42781_zma-MIR319b:mirbase
Length = 213
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 5 gagggagctcccttcagtccaagca 29
|||||||| ||||||||||||||||
Sbjct: 196 gagggagcacccttcagtccaagca 172
>42563_sbi-MIR319:mirbase
Length = 249
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 5 gagggagctcccttcagtccaagca 29
|||||||| ||||||||||||||||
Sbjct: 212 gagggagcacccttcagtccaagca 188
>41995_osa-MIR319b:mirbase
Length = 197
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 5 gagggagctcccttcagtccaagca 29
|||||||| ||||||||||||||||
Sbjct: 189 gagggagcacccttcagtccaagca 165
>41405_ptc-MIR319b:mirbase
Length = 185
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaa 26
|||||||||||||||||||||
Sbjct: 177 agggagctcccttcagtccaa 157
>41026_pvu-MIR319c:mirbase
Length = 734
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 8 ggagctcccttcagtccaagc 28
|||||||||||||||||||||
Sbjct: 428 ggagctcccttcagtccaagc 408
>39484_ppt-MIR319e:mirbase
Length = 174
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 gggagctcccttcagtccaag 27
|||||||||||||||||||||
Sbjct: 167 gggagctcccttcagtccaag 147
>39483_ppt-MIR319d:mirbase
Length = 170
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 gggagctcccttcagtccaag 27
|||||||||||||||||||||
Sbjct: 165 gggagctcccttcagtccaag 145
>39482_ppt-MIR319c:mirbase
Length = 189
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 gggagctcccttcagtccaag 27
|||||||||||||||||||||
Sbjct: 174 gggagctcccttcagtccaag 154
>41639_vvi-MIR319g:mirbase
Length = 222
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 7 gggagctcccttcagtccaa 26
||||||||||||||||||||
Sbjct: 211 gggagctcccttcagtccaa 192
>41544_sly-MIR319:mirbase
Length = 168
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 8 ggagctcccttcagtccaag 27
||||||||||||||||||||
Sbjct: 168 ggagctcccttcagtccaag 149
>39481_ppt-MIR319b:mirbase
Length = 160
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 8 ggagctcccttcagtccaag 27
||||||||||||||||||||
Sbjct: 159 ggagctcccttcagtccaag 140
>39480_ppt-MIR319a:mirbase
Length = 169
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 8 ggagctcccttcagtccaag 27
||||||||||||||||||||
Sbjct: 167 ggagctcccttcagtccaag 148
