miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42645_tae-MIR398:mirbase
Length = 120
Score = 238 bits (120), Expect = 8e-64
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 2 agacgcgaggaaattcctgcggggtcgaactgggaacacatgggatacgaaccgcttgat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agacgcgaggaaattcctgcggggtcgaactgggaacacatgggatacgaaccgcttgat 60
Query: 62 tgaggagcgactcttatcaactcatgtgttctcaggtcgcccccgctggagcctcctcgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgaggagcgactcttatcaactcatgtgttctcaggtcgcccccgctggagcctcctcgc 120
>40729_mtr-MIR398b:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 79 caactcatgtgttctcaggtcgcccccgctg 109
|||||||||||||||||||||||||| ||||
Sbjct: 55 caactcatgtgttctcaggtcgcccctgctg 85
>41801_bdi-MIR398c:mirbase
Length = 131
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 6 gcgaggaaattcctgcggggtcgaactgggaacacatg 43
|||||||| ||||||| |||||||| ||||||||||||
Sbjct: 9 gcgaggaagttcctgcagggtcgaattgggaacacatg 46
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 84 catgtgttctcaggtcgcccc 104
|||||||||||||||||||||
Sbjct: 85 catgtgttctcaggtcgcccc 105
>41799_bdi-MIR398a:mirbase
Length = 150
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 6 gcgaggaaattcctgcggggtcgaactgggaacacatg 43
|||||||| ||||||| |||||||| ||||||||||||
Sbjct: 18 gcgaggaagttcctgcagggtcgaattgggaacacatg 55
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 84 catgtgttctcaggtcgcccc 104
|||||||||||||||||||||
Sbjct: 94 catgtgttctcaggtcgcccc 114
>41667_vvi-MIR398c:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 82 ctcatgtgttctcaggtcgcccccgctgga 111
||||||||||||||||||||||| ||||||
Sbjct: 54 ctcatgtgttctcaggtcgcccctgctgga 83
>41666_vvi-MIR398b:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 82 ctcatgtgttctcaggtcgcccccgctgga 111
||||||||||||||||||||||| ||||||
Sbjct: 54 ctcatgtgttctcaggtcgcccctgctgga 83
>42817_zma-MIR398a:mirbase
Length = 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 catgtgttctcaggtcgcccccgc 107
||||||||||||||||||||||||
Sbjct: 117 catgtgttctcaggtcgcccccgc 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 82 ctcatgtgttctcaggtcgccccc 105
||||||||||||||| ||||||||
Sbjct: 24 ctcatgtgttctcagttcgccccc 1
>42588_sbi-MIR398:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 catgtgttctcaggtcgcccccgc 107
||||||||||||||||||||||||
Sbjct: 86 catgtgttctcaggtcgcccccgc 109
>42818_zma-MIR398b:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 84 catgtgttctcaggtcgcccccg 106
|||||||||||||||||||||||
Sbjct: 85 catgtgttctcaggtcgcccccg 107
>41446_ptc-MIR398b:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 tcatgtgttctcaggtcgcccc 104
||||||||||||||||||||||
Sbjct: 53 tcatgtgttctcaggtcgcccc 74
>40382_rco-MIR398b:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 tcatgtgttctcaggtcgcccc 104
||||||||||||||||||||||
Sbjct: 98 tcatgtgttctcaggtcgcccc 119
>41447_ptc-MIR398c:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 84 catgtgttctcaggtcgcccc 104
|||||||||||||||||||||
Sbjct: 66 catgtgttctcaggtcgcccc 86
>41191_aqc-MIR398b:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 84 catgtgttctcaggtcgcccc 104
|||||||||||||||||||||
Sbjct: 70 catgtgttctcaggtcgcccc 90
>41144_tcc-MIR398a:mirbase
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 atgtgttctcaggtcgcccc 104
||||||||||||||||||||
Sbjct: 84 atgtgttctcaggtcgcccc 103
>40730_mtr-MIR398c:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 tgtgttctcaggtcgcccccgctg 109
||||||||||||||||||| ||||
Sbjct: 62 tgtgttctcaggtcgcccctgctg 85
