miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41875_far-MIR396:mirbase
Length = 170
Score = 281 bits (142), Expect = 7e-77
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 11 gcggccatgctctccacaggctttcttgaactgtgaactcgcgcgcgtgcgccgccggcc 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcggccatgctctccacaggctttcttgaactgtgaactcgcgcgcgtgcgccgccggcc 60
Query: 71 tgctacttctcgcttcgatcttgtctgcctagcttgttcatggttcaagaaagtccttgg 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgctacttctcgcttcgatcttgtctgcctagcttgttcatggttcaagaaagtccttgg 120
Query: 131 aaaacatgcccgcctctctcct 152
||||||||||||||||||||||
Sbjct: 121 aaaacatgcccgcctctctcct 142
>41791_bdi-MIR396a:mirbase
Length = 209
Score = 83.8 bits (42), Expect = 3e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 11 gcggccatgctctccacaggctttcttgaactgtgaactcgcgcgc 56
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 21 gcggccatgctctccacaggctttcttgaactgtgaactcgtgcgc 66
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 103 cttgttcatggttcaagaaagtccttggaaaacatgcccgcc 144
|||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 146 cttgttgatggttcaagaaagtccttggaaaacatggccgcc 187
>42033_osa-MIR396f:mirbase
Length = 176
Score = 75.8 bits (38), Expect = 8e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 14 gccatgctctccacaggctttcttgaactgtgaactcg 51
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccatgctctccacaggctttcttgaactgtgaactcg 38
Score = 56.0 bits (28), Expect = 8e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 103 cttgttcatggttcaagaaagtccttggaaaacatg 138
|||||| || ||||||||||||||||||||||||||
Sbjct: 138 cttgttgatagttcaagaaagtccttggaaaacatg 173
>42032_osa-MIR396f:mirbase
Length = 176
Score = 75.8 bits (38), Expect = 8e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 14 gccatgctctccacaggctttcttgaactgtgaactcg 51
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccatgctctccacaggctttcttgaactgtgaactcg 38
Score = 56.0 bits (28), Expect = 8e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 103 cttgttcatggttcaagaaagtccttggaaaacatg 138
|||||| || ||||||||||||||||||||||||||
Sbjct: 138 cttgttgatagttcaagaaagtccttggaaaacatg 173
>41796_bdi-MIR396f:mirbase
Length = 161
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 10 cgcggccatgctctccacaggctttcttgaactgtgaactcg 51
||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 7 cgcgggcatgctttccacaggctttcttgaactgtgaactcg 48
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 105 tgttcatggttcaagaaagtccttggaaaacatgcc 140
|||| |||||||||||||| || |||||| ||||||
Sbjct: 118 tgttgatggttcaagaaagcccatggaaaccatgcc 153
>41792_bdi-MIR396b:mirbase
Length = 189
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 10 cgcggccatgctctccacaggctttcttgaactgtgaactcg 51
||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 19 cgcgggcatgctttccacaggctttcttgaactgtgaactcg 60
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 105 tgttcatggttcaagaaagtccttggaaaacatgcc 140
|||| |||||||||||||| || |||||| ||||||
Sbjct: 130 tgttgatggttcaagaaagcccatggaaaccatgcc 165
>42031_osa-MIR396e:mirbase
Length = 184
Score = 65.9 bits (33), Expect = 8e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 11 gcggccatgctctccacaggctttcttgaactgtgaactcg 51
|||| |||||| |||||||||||||||||||||||||||||
Sbjct: 1 gcgggcatgctttccacaggctttcttgaactgtgaactcg 41
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 105 tgttcatggttcaagaaagtccttggaaaacatgcc 140
|||| |||||||||||||| || |||||| ||||||
Sbjct: 147 tgttgatggttcaagaaagcccatggaaaccatgcc 182
>42030_osa-MIR396e:mirbase
Length = 184
Score = 65.9 bits (33), Expect = 8e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 11 gcggccatgctctccacaggctttcttgaactgtgaactcg 51
|||| |||||| |||||||||||||||||||||||||||||
Sbjct: 1 gcgggcatgctttccacaggctttcttgaactgtgaactcg 41
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 105 tgttcatggttcaagaaagtccttggaaaacatgcc 140
|||| |||||||||||||| || |||||| ||||||
Sbjct: 147 tgttgatggttcaagaaagcccatggaaaccatgcc 182
>42029_osa-MIR396d:mirbase
Length = 142
Score = 65.9 bits (33), Expect = 8e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 11 gcggccatgctctccacaggctttcttgaactgtgaactcg 51
|||| |||||| |||||||||||||||||||||||||||||
Sbjct: 9 gcgggcatgctttccacaggctttcttgaactgtgaactcg 49
>42810_zma-MIR396d:mirbase
Length = 74
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 16 catgctctccacaggctttcttgaactgtgaactcg 51
|||||| |||||||||||||||||||||||||||||
Sbjct: 5 catgctttccacaggctttcttgaactgtgaactcg 40
>42809_zma-MIR396c:mirbase
Length = 74
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 16 catgctctccacaggctttcttgaactgtgaactcg 51
|||||| |||||||||||||||||||||||||||||
Sbjct: 5 catgctttccacaggctttcttgaactgtgaactcg 40
>42585_sbi-MIR396d:mirbase
Length = 96
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 22 ctccacaggctttcttgaactgtgaactcgcgcgcgtgc 60
|||||||||||||||||||||||||||||| |||||||
Sbjct: 1 ctccacaggctttcttgaactgtgaactcgatcgcgtgc 39
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 105 tgttcatggttcaagaaagtccttggaa 132
|||| |||||||||||||||||||||||
Sbjct: 69 tgttgatggttcaagaaagtccttggaa 96
>42586_sbi-MIR396e:mirbase
Length = 189
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 23 tccacaggctttcttgaactgtgaactcg 51
|||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcg 31
