miRNEST 2.0, an integrative microRNA resource :: BLAST
>25654_xla-mir-1b:mirbase
Length = 59
Score = 117 bits (59), Expect = 2e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 25 catacttctttatatgcccatactgaatgccaatgctatggaatgttaagaagtatgta 83
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catacttctttatatgcccatactgaatgccaatgctatggaatgttaagaagtatgta 59
>25686_xtr-mir-1b:mirbase
Length = 62
Score = 107 bits (54), Expect = 2e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 22 gcacatacttctttatatgcccatactgaatgccaatgctatggaatgttaagaagtatg 81
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gcacatacttctttatatgcccatactgaatgaaaatgctatggaatgttaagaagtatg 60
Query: 82 ta 83
||
Sbjct: 61 ta 62
>25685_xtr-mir-1a-2:mirbase
Length = 71
Score = 73.8 bits (37), Expect = 2e-14
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 24 acatacttctttatatgcccatactgaa-tgccaatgctatggaatgttaagaagtatgt 82
||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||
Sbjct: 7 acatacttctttatatgtccatatggaagtgccaatgctatggaatgtaaagaagtatgt 66
Query: 83 a 83
|
Sbjct: 67 a 67
>31763_mmu-mir-1a-1:mirbase
Length = 77
Score = 56.0 bits (28), Expect = 5e-09
Identities = 57/63 (90%), Gaps = 4/63 (6%)
Strand = Plus / Plus
Query: 23 cacatacttctttatatgcccatactgaa--tgccaatgctatggaatgttaagaagtat 80
|||||||||||||||||||||||| |||| ||| || |||||||||||| |||||||||
Sbjct: 9 cacatacttctttatatgcccata-tgaacctgctaa-gctatggaatgtaaagaagtat 66
Query: 81 gta 83
|||
Sbjct: 67 gta 69
>25879_gga-mir-1a-1:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/62 (90%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 24 acatacttctttatatgcccatactgaa--tgccaatgctatggaatgttaagaagtatg 81
||||||||||||||||||||||| |||| || |||| ||||||||||| ||||||||||
Sbjct: 7 acatacttctttatatgcccata-tgaacctggcaat-ctatggaatgtaaagaagtatg 64
Query: 82 ta 83
||
Sbjct: 65 ta 66
>26388_tgu-mir-1-1:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/62 (90%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 24 acatacttctttatatgcccatactgaa--tgccaatgctatggaatgttaagaagtatg 81
||||||||||||||||||||||| |||| || ||| |||||||||||| ||||||||||
Sbjct: 2 acatacttctttatatgcccata-tgaacctggcaa-gctatggaatgtaaagaagtatg 59
Query: 82 ta 83
||
Sbjct: 60 ta 61
>25684_xtr-mir-1a-1:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 caatgctatggaatgttaagaagtatgta 83
|||||||||||||||| ||||||||||||
Sbjct: 45 caatgctatggaatgtaaagaagtatgta 73
>25880_gga-mir-1a-2:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 caatgctatggaatgttaagaagtatgta 83
|||||||||||||||| ||||||||||||
Sbjct: 45 caatgctatggaatgtaaagaagtatgta 73
>26389_tgu-mir-1-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 caatgctatggaatgttaagaagtatgta 83
|||||||||||||||| ||||||||||||
Sbjct: 33 caatgctatggaatgtaaagaagtatgta 61
>26614_cfa-mir-1-2:mirbase
Length = 59
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 caatgctatggaatgttaagaagtatgta 83
|||||||||||||||| ||||||||||||
Sbjct: 31 caatgctatggaatgtaaagaagtatgta 59
>26936_eca-mir-1:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 caatgctatggaatgttaagaagtatgta 83
|||||||||||||||| ||||||||||||
Sbjct: 42 caatgctatggaatgtaaagaagtatgta 70
>26937_eca-mir-1-2:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 3e-07
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 24 acatacttctttatatgcccatactga-atgccaatgctatggaatgttaagaagtatgt 82
||||||||||||||||||||||| || ||| || |||||||||||| |||||||||||
Sbjct: 10 acatacttctttatatgcccatatggacctgctaa-gctatggaatgtaaagaagtatgt 68
Query: 83 a 83
|
Sbjct: 69 a 69
>27327_mdo-mir-1:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 caatgctatggaatgttaagaagtatgta 83
|||||||||||||||| ||||||||||||
Sbjct: 45 caatgctatggaatgtaaagaagtatgta 73
>27640_mml-mir-1-1:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 3e-07
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 24 acatacttctttatatgcccatactga-atgccaatgctatggaatgttaagaagtatgt 82
||||||||||||||||||||||| || ||| || |||||||||||| |||||||||||
Sbjct: 10 acatacttctttatatgcccatatggacctgctaa-gctatggaatgtaaagaagtatgt 68
Query: 83 a 83
|
Sbjct: 69 a 69
>28350_hsa-mir-1-1:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 24 acatacttctttatatgcccatactga-atgccaatgctatggaatgttaagaagtatgt 82
||||||||||||||||||||||| || ||| || |||||||||||| |||||||||||
Sbjct: 7 acatacttctttatatgcccatatggacctgctaa-gctatggaatgtaaagaagtatgt 65
Query: 83 a 83
|
Sbjct: 66 a 66
>28351_hsa-mir-1-2:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 caatgctatggaatgttaagaagtatgta 83
|||||||||||||||| ||||||||||||
Sbjct: 45 caatgctatggaatgtaaagaagtatgta 73
>30036_ppa-mir-1:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 caatgctatggaatgttaagaagtatgta 83
|||||||||||||||| ||||||||||||
Sbjct: 45 caatgctatggaatgtaaagaagtatgta 73
>30137_ptr-mir-1-1:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 3e-07
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 24 acatacttctttatatgcccatactga-atgccaatgctatggaatgttaagaagtatgt 82
||||||||||||||||||||||| || ||| || |||||||||||| |||||||||||
Sbjct: 6 acatacttctttatatgcccatatggacctgctaa-gctatggaatgtaaagaagtatgt 64
Query: 83 a 83
|
Sbjct: 65 a 65
>30138_ptr-mir-1-2:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 caatgctatggaatgttaagaagtatgta 83
|||||||||||||||| ||||||||||||
Sbjct: 45 caatgctatggaatgtaaagaagtatgta 73
>30742_ppy-mir-1-1:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 24 acatacttctttatatgcccatactga-atgccaatgctatggaatgttaagaagtatgt 82
||||||||||||||||||||||| || ||| || |||||||||||| |||||||||||
Sbjct: 7 acatacttctttatatgcccatatggacctgctaa-gctatggaatgtaaagaagtatgt 65
Query: 83 a 83
|
Sbjct: 66 a 66
>33120_bta-mir-1-2:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 caatgctatggaatgttaagaagtatgta 83
|||||||||||||||| ||||||||||||
Sbjct: 45 caatgctatggaatgtaaagaagtatgta 73
>38847_lgi-mir-1:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 56 aatgctatggaatgttaagaagtatgta 83
||||||||||||||| ||||||||||||
Sbjct: 49 aatgctatggaatgtaaagaagtatgta 76
>26613_cfa-mir-1-1:mirbase
Length = 59
Score = 48.1 bits (24), Expect = 1e-06
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 25 catacttctttatatgcccatactga-atgccaatgctatggaatgttaagaagtatgta 83
|||||||||||||||||||||| || ||| || |||||||||||| ||||||||||||
Sbjct: 1 catacttctttatatgcccatatggacctgctaa-gctatggaatgtaaagaagtatgta 59
>25881_gga-mir-1b:mirbase
Length = 64
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatggaatgttaagaagtatgta 83
|||||||||||||||||||||||
Sbjct: 40 tatggaatgttaagaagtatgta 62
>34184_dre-mir-1-1:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 acatacttctttatatgcccata 46
|||||||||||||||||||||||
Sbjct: 23 acatacttctttatatgcccata 45
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 gctatggaatgttaagaagtatgta 83
|||||||||||| ||||||||||||
Sbjct: 58 gctatggaatgtaaagaagtatgta 82
>31764_mmu-mir-1a-2:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 58 tgctatggaatgttaagaagtatgta 83
||||||||||||| ||||||||||||
Sbjct: 42 tgctatggaatgtaaagaagtatgta 67
>31765_mmu-mir-1b:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 58 tgctatggaatgttaagaagtatgta 83
||||||||||||| ||||||||||||
Sbjct: 66 tgctatggaatgtaaagaagtatgta 41
>31766_mmu-mir-1b:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 58 tgctatggaatgttaagaagtatgta 83
||||||||||||| ||||||||||||
Sbjct: 66 tgctatggaatgtaaagaagtatgta 41
>25417_pma-mir-1c:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 gctatggaatgttaagaagtatgta 83
|||||||||||| ||||||||||||
Sbjct: 53 gctatggaatgtaaagaagtatgta 77
>27641_mml-mir-1-2:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 gctatggaatgttaagaagtatgta 83
|||||||||||| ||||||||||||
Sbjct: 42 gctatggaatgtaaagaagtatgta 66
>31416_oan-mir-1a:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 gctatggaatgttaagaagtatgta 83
|||||||||||| ||||||||||||
Sbjct: 58 gctatggaatgtaaagaagtatgta 82
>33119_bta-mir-1-1:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 gctatggaatgttaagaagtatgta 83
|||||||||||| ||||||||||||
Sbjct: 45 gctatggaatgtaaagaagtatgta 69
>33905_ssc-mir-1:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 gctatggaatgttaagaagtatgta 83
|||||||||||| ||||||||||||
Sbjct: 60 gctatggaatgtaaagaagtatgta 84
>34185_dre-mir-1-2:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 gctatggaatgttaagaagtatgta 83
|||||||||||| ||||||||||||
Sbjct: 50 gctatggaatgtaaagaagtatgta 74
>38595_ppc-mir-1:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 tatggaatgttaagaagtatgtaa 84
|||||||||| |||||||||||||
Sbjct: 65 tatggaatgtaaagaagtatgtaa 88
>32648_rno-mir-1:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 56 aatgctatggaatgttaagaagtatgta 83
||||||||||||||| ||||||| ||||
Sbjct: 47 aatgctatggaatgtaaagaagtgtgta 74
>33064_rno-mir-3571:mirbase
Length = 111
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 56 aatgctatggaatgttaagaagtatgta 83
||||||||||||||| ||||||| ||||
Sbjct: 52 aatgctatggaatgtaaagaagtgtgta 25
>34535_fru-mir-1:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 60 ctatggaatgttaagaagtatgta 83
||||||||||| ||||||||||||
Sbjct: 46 ctatggaatgtaaagaagtatgta 69
>34683_tni-mir-1:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 60 ctatggaatgttaagaagtatgta 83
||||||||||| ||||||||||||
Sbjct: 54 ctatggaatgtaaagaagtatgta 77
>34806_spu-mir-1:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 60 ctatggaatgttaagaagtatgta 83
||||||||||| ||||||||||||
Sbjct: 57 ctatggaatgtaaagaagtatgta 80
