miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25900_gga-mir-18b:mirbase
Length = 84
Score = 163 bits (82), Expect = 2e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 tggtccttgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tggtccttgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccc 62
Query: 61 taaatgctccttctggcacaag 82
||||||||||||||||||||||
Sbjct: 63 taaatgctccttctggcacaag 84
>31432_oan-mir-18:mirbase
Length = 130
Score = 147 bits (74), Expect = 1e-36
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 5 ccttgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaa 64
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 21 ccttgtgttaaggtgcatctagtgcagttagtgaagtagcttagaatctactgccctaaa 80
Query: 65 tgctccttctggcacaagctgc 86
||||||||||||||||||||||
Sbjct: 81 tgctccttctggcacaagctgc 102
>25656_xla-mir-18:mirbase
Length = 79
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 5 ccttgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaa 64
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 1 ccttgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaa 60
Query: 65 tgctccttctggcaca 80
|||||||| |||||||
Sbjct: 61 tgctccttttggcaca 76
>25706_xtr-mir-18b:mirbase
Length = 78
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 5 ccttgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaa 64
||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||
Sbjct: 1 ccttgtgttaaggtgcatctagtgcagttagtgacatagtgtagcatctactgccctaaa 60
Query: 65 tgctccttctggcaca 80
|||||||| |||||||
Sbjct: 61 tgctccttttggcaca 76
>33918_ssc-mir-18b:mirbase
Length = 83
Score = 119 bits (60), Expect = 3e-28
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 6 cttgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaat 65
||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 4 cttgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaat 63
Query: 66 gctccttctggcacaagctg 85
|| |||||||||||| ||||
Sbjct: 64 gccccttctggcacaggctg 83
>33135_bta-mir-18b:mirbase
Length = 75
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 6 cttgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaat 65
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 1 cttgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaat 60
Query: 66 gctccttctggcaca 80
|||||||||||||||
Sbjct: 61 gctccttctggcaca 75
>27657_mml-mir-18b:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 8 tgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgc 67
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 68 tccttctggca 78
||||||||||
Sbjct: 61 cccttctggca 71
>28366_hsa-mir-18b:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 8 tgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgc 67
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 68 tccttctggca 78
||||||||||
Sbjct: 61 cccttctggca 71
>30758_ppy-mir-18b:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 8 tgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgc 67
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 68 tccttctggca 78
||||||||||
Sbjct: 61 cccttctggca 71
>30153_ptr-mir-18b:mirbase
Length = 70
Score = 99.6 bits (50), Expect = 3e-22
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 8 tgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgc 67
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 68 tccttctggc 77
|| ||||||
Sbjct: 61 cccatctggc 70
>31781_mmu-mir-18b:mirbase
Length = 83
Score = 93.7 bits (47), Expect = 2e-20
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 6 cttgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaat 65
|||||||||||||||||||||||| |||||||| | ||| || |||||||||||||||||
Sbjct: 4 cttgtgttaaggtgcatctagtgctgttagtgaagcagcttacaatctactgccctaaat 63
Query: 66 gctccttctggcaca 80
|| |||||| |||||
Sbjct: 64 gccccttctcgcaca 78
>26629_cfa-mir-18b:mirbase
Length = 77
Score = 89.7 bits (45), Expect = 3e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 8 tgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgc 67
||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||
Sbjct: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
Query: 68 tccttctggcaca 80
||||| ||||||
Sbjct: 63 cccttccggcaca 75
>26951_eca-mir-18b:mirbase
Length = 59
Score = 85.7 bits (43), Expect = 5e-18
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgc 67
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 55
>25705_xtr-mir-18a:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 73 ctggca 78
||||||
Sbjct: 74 ctggca 79
>25899_gga-mir-18a:mirbase
Length = 93
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 73 ctggca 78
||||||
Sbjct: 74 ctggca 79
>26628_cfa-mir-18a:mirbase
Length = 92
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 73 ctggca 78
||||||
Sbjct: 74 ctggca 79
>27337_mdo-mir-18:mirbase
Length = 72
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 7 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 66
Query: 73 ctggca 78
||||||
Sbjct: 67 ctggca 72
>27483_age-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 73 ctggca 78
||||||
Sbjct: 66 ctggca 71
>27544_lla-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 73 ctggca 78
||||||
Sbjct: 66 ctggca 71
>27592_sla-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 73 ctggca 78
||||||
Sbjct: 66 ctggca 71
>27656_mml-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 73 ctggca 78
||||||
Sbjct: 66 ctggca 71
>28175_mne-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 73 ctggca 78
||||||
Sbjct: 66 ctggca 71
>28263_ggo-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 73 ctggca 78
||||||
Sbjct: 66 ctggca 71
>28365_hsa-mir-18a:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 73 ctggca 78
||||||
Sbjct: 66 ctggca 71
>30047_ppa-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 73 ctggca 78
||||||
Sbjct: 66 ctggca 71
>30152_ptr-mir-18a:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 73 ctggca 78
||||||
Sbjct: 66 ctggca 71
>30757_ppy-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 73 ctggca 78
||||||
Sbjct: 66 ctggca 71
>31397_lca-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 73 ctggca 78
||||||
Sbjct: 66 ctggca 71
>31780_mmu-mir-18a:mirbase
Length = 96
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
Query: 73 ctggca 78
||||||
Sbjct: 77 ctggca 82
>32664_rno-mir-18a:mirbase
Length = 96
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
Query: 73 ctggca 78
||||||
Sbjct: 77 ctggca 82
>33134_bta-mir-18a:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 73 ctggca 78
||||||
Sbjct: 66 ctggca 71
>33917_ssc-mir-18a:mirbase
Length = 92
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 73 ctggca 78
||||||
Sbjct: 74 ctggca 79
>34211_dre-mir-18a:mirbase
Length = 83
Score = 81.8 bits (41), Expect = 7e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 7 ttgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatg 66
||||| ||||||||||||||||||| |||||| |||| ||| | |||||||||||| ||
Sbjct: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtg 64
Query: 67 ctccttctggcac 79
|||||||||||||
Sbjct: 65 ctccttctggcac 77
>26405_tgu-mir-18b:mirbase
Length = 132
Score = 77.8 bits (39), Expect = 1e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 2 ggtccttgtgttaaggtgcatctagtgcagttagtgacgtagc 44
||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 90 ggtccttgtgttaaggtgcatctagtgcagttagtgatgtagc 132
>26404_tgu-mir-18a:mirbase
Length = 72
Score = 75.8 bits (38), Expect = 4e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
Query: 73 ct 74
||
Sbjct: 71 ct 72
>26950_eca-mir-18a:mirbase
Length = 61
Score = 73.8 bits (37), Expect = 2e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 1 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 60
Query: 73 c 73
|
Sbjct: 61 c 61
>34550_fru-mir-18:mirbase
Length = 76
Score = 71.9 bits (36), Expect = 7e-14
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 7 ttgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatg 66
||||| ||||||||||||||||||| |||||| ||| ||| | |||||||||||| ||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
Query: 67 ctccttctggca 78
||||||||||||
Sbjct: 61 ctccttctggca 72
>34698_tni-mir-18:mirbase
Length = 76
Score = 71.9 bits (36), Expect = 7e-14
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 7 ttgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatg 66
||||| ||||||||||||||||||| |||||| ||| ||| | |||||||||||| ||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
Query: 67 ctccttctggca 78
||||||||||||
Sbjct: 61 ctccttctggca 72
>34212_dre-mir-18b:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
|||||||||| |||||||| |||||| ||| ||| | |||||||||||| ||| ||||
Sbjct: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
Query: 73 ctggca 78
||||||
Sbjct: 73 ctggca 78
>34213_dre-mir-18c:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 6e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 13 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 72
|||||||||||| ||| ||||||||| |||| ||| ||||||||| ||| ||| |||||
Sbjct: 11 taaggtgcatcttgtgtagttagtgaagtagtctagtatctactgcgctagatgttcctt 70
Query: 73 ctggca 78
|||||
Sbjct: 71 ttggca 76
>25433_pma-mir-18a:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 cttgtgttaaggtgcatctagtgcagttagt 36
|||||| ||||||||||||||||||| ||||
Sbjct: 11 cttgtgctaaggtgcatctagtgcagatagt 41
