miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34651_fru-mir-375:mirbase
Length = 77
Score = 113 bits (57), Expect = 2e-26
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 11 tgtatttgcctcacgttgagccatacgcacaatacctgaagatgaagttttgttcgttcg 70
|||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtacttgcttcacgttgagcctcacgcacaatacctgaagatgaagttttgttcgttcg 60
Query: 71 gctcgcgttaagcaggt 87
|||||||||| ||||||
Sbjct: 61 gctcgcgttatgcaggt 77
>34799_tni-mir-375:mirbase
Length = 77
Score = 113 bits (57), Expect = 2e-26
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 11 tgtatttgcctcacgttgagccatacgcacaatacctgaagatgaagttttgttcgttcg 70
|||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtacttgcttcacgttgagcctcacgcacaatacctgaagatgaagttttgttcgttcg 60
Query: 71 gctcgcgttaagcaggt 87
|||||||||| ||||||
Sbjct: 61 gctcgcgttatgcaggt 77
>34399_dre-mir-375-2:mirbase
Length = 83
Score = 79.8 bits (40), Expect = 3e-16
Identities = 69/78 (88%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 11 tgtatttgcctcacgttgagccatacgcacaatacctgaagatgaa---gttttgttcgt 67
|||| ||| |||||||||||||| ||||||||| |||| ||||||| |||||||||||
Sbjct: 1 tgtacttgtctcacgttgagccacacgcacaatgcctgcagatgaaagggttttgttcgt 60
Query: 68 tcggctcgcgttaagcag 85
||||||||||||| ||||
Sbjct: 61 tcggctcgcgttacgcag 78
>34398_dre-mir-375-1:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 5e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 23 acgttgagccatacgcacaatacctgaagatgaagttttgttcgttcggctcgcgttaag 82
||||||||||| ||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct: 13 acgttgagccacacgcacaatacatgtggattcagttttgttcgttcggctcgcgttaag 72
Query: 83 ca 84
||
Sbjct: 73 ca 74
>25853_xtr-mir-375:mirbase
Length = 70
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgttaagcaggt 87
|||||||||||||||||||||||||||||||
Sbjct: 39 gttttgttcgttcggctcgcgttaagcaggt 69
>26528_tgu-mir-375:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgttaagcaggt 87
|||||||||||||||||||||||| ||||||
Sbjct: 39 gttttgttcgttcggctcgcgttaggcaggt 69
>38887_lgi-mir-375:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgtta 80
||||||||||||||||||||||||
Sbjct: 59 gttttgttcgttcggctcgcgtta 82
>24704_bfl-mir-375:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgtta 80
||||||||||||||||||||||||
Sbjct: 59 gttttgttcgttcggctcgcgtta 82
>25543_pma-mir-375a:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgttaagcagg 86
|||||||||||||||||||||| |||||
Sbjct: 59 tttgttcgttcggctcgcgttacgcagg 86
>26024_gga-mir-375:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgtta 80
||||||||||||||||||||||||
Sbjct: 39 gttttgttcgttcggctcgcgtta 62
>25544_pma-mir-375b:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgtt 79
|||||||||||||||||||||||
Sbjct: 57 gttttgttcgttcggctcgcgtt 79
>26822_cfa-mir-375:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgt 78
||||||||||||||||||||||
Sbjct: 39 gttttgttcgttcggctcgcgt 60
>27447_mdo-mir-375:mirbase
Length = 63
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgt 78
||||||||||||||||||||||
Sbjct: 37 gttttgttcgttcggctcgcgt 58
>27878_mml-mir-375:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgt 78
||||||||||||||||||||||
Sbjct: 38 gttttgttcgttcggctcgcgt 59
>28616_hsa-mir-375:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgt 78
||||||||||||||||||||||
Sbjct: 38 gttttgttcgttcggctcgcgt 59
>30352_ptr-mir-375:mirbase
Length = 63
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgt 78
||||||||||||||||||||||
Sbjct: 38 gttttgttcgttcggctcgcgt 59
>30979_ppy-mir-375:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgt 78
||||||||||||||||||||||
Sbjct: 38 gttttgttcgttcggctcgcgt 59
>32044_mmu-mir-375:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgt 78
||||||||||||||||||||||
Sbjct: 38 gttttgttcgttcggctcgcgt 59
>32888_rno-mir-375:mirbase
Length = 75
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgt 78
||||||||||||||||||||||
Sbjct: 43 gttttgttcgttcggctcgcgt 64
>33347_bta-mir-375:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgt 78
||||||||||||||||||||||
Sbjct: 38 gttttgttcgttcggctcgcgt 59
>34837_spu-mir-375:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgt 78
||||||||||||||||||||||
Sbjct: 59 gttttgttcgttcggctcgcgt 80
>38778_cte-mir-375:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgttaa 81
||||||||||| |||||||||||||
Sbjct: 59 gttttgttcgtccggctcgcgttaa 83
>34988_isc-mir-375:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgtta 80
||||||||||||||||||| ||||
Sbjct: 59 gttttgttcgttcggctcgagtta 82
