miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34261_dre-mir-99-1:mirbase
Length = 84
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 cacttgtcattaacccgtagatccgatcttgtg 33
|||||||||||||||||||||||||||||||||
Sbjct: 3 cacttgtcattaacccgtagatccgatcttgtg 35
>34262_dre-mir-99-2:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 cacttgtcattaacccgtagatccgatcttgtg 33
||||||||| ||||||||||||||||||||||
Sbjct: 1 cacttgtcacaaacccgtagatccgatcttgtg 33
>25754_xtr-mir-99:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgatcttgtg 29
>25929_gga-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgatcttgtg 34
>26439_tgu-mir-99-2:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 11 aacccgtagatccgatcttgtg 32
>26438_tgu-mir-99-1:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 11 aacccgtagatccgatcttgtg 32
>26674_cfa-mir-99a-2:mirbase
Length = 57
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 1 aacccgtagatccgatcttgtg 22
>26673_cfa-mir-99a-1:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 1 aacccgtagatccgatcttgtg 22
>26995_eca-mir-99a-2:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgatcttgtg 34
>27562_lla-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgatcttgtg 34
>27702_mml-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgatcttgtg 34
>28201_mne-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgatcttgtg 34
>28292_ggo-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgatcttgtg 34
>28412_hsa-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgatcttgtg 34
>30079_ppa-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgatcttgtg 34
>30196_ptr-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgatcttgtg 34
>30802_ppy-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgatcttgtg 34
>31470_oan-mir-99:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 24 aacccgtagatccgatcttgtg 45
>31825_mmu-mir-99a:mirbase
Length = 65
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 5 aacccgtagatccgatcttgtg 26
>32706_rno-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgatcttgtg 34
>33185_bta-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgatcttgtg 34
>33956_ssc-mir-99a:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 12 aacccgtagatccgatcttgtg 33
>25755_xtr-mir-100:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgct 35
||||||||||||||| ||||||||
Sbjct: 10 aacccgtagatccgaacttgtgct 33
>26440_tgu-mir-100-1:mirbase
Length = 111
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgct 35
||||||||||||||| ||||||||
Sbjct: 11 aacccgtagatccgaacttgtgct 34
>26441_tgu-mir-100-2:mirbase
Length = 111
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgct 35
||||||||||||||| ||||||||
Sbjct: 11 aacccgtagatccgaacttgtgct 34
>31827_mmu-mir-100:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgct 35
||||||||||||||| ||||||||
Sbjct: 13 aacccgtagatccgaacttgtgct 36
>32708_rno-mir-100:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgct 35
||||||||||||||| ||||||||
Sbjct: 13 aacccgtagatccgaacttgtgct 36
>33958_ssc-mir-100:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgct 35
||||||||||||||| ||||||||
Sbjct: 16 aacccgtagatccgaacttgtgct 39
>35190_aae-mir-100:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgct 35
||||||||||||||| ||||||||
Sbjct: 31 aacccgtagatccgaacttgtgct 54
>35288_aga-mir-100:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgct 35
||||||||||||||| ||||||||
Sbjct: 15 aacccgtagatccgaacttgtgct 38
>36020_cqu-mir-100:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgct 35
||||||||||||||| ||||||||
Sbjct: 23 aacccgtagatccgaacttgtgct 46
>24672_bfl-mir-100:mirbase
Length = 100
Score = 38.2 bits (19), Expect = 8e-04
Identities = 46/55 (83%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgctacttaacaacgcaagctcgtctctatgggtc 66
||||||||||||||| |||||| | ||| | | ||||||||| ||||||||||
Sbjct: 21 aacccgtagatccgaacttgtgttgcttcagttcacaagctcgtgtctatgggtc 75
>34970_isc-mir-100:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 taacccgtagatccgatcttgtg 33
|||||||||||||||| ||||||
Sbjct: 20 taacccgtagatccgaacttgtg 42
>35366_ame-mir-100:mirbase
Length = 100
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 taacccgtagatccgatcttgtg 33
|||||||||||||||| ||||||
Sbjct: 18 taacccgtagatccgaacttgtg 40
>35537_bmo-mir-100:mirbase
Length = 142
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgc 34
||||||||||||||| |||||||
Sbjct: 21 aacccgtagatccgaacttgtgc 43
>37648_nvi-mir-100:mirbase
Length = 100
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 taacccgtagatccgatcttgtg 33
|||||||||||||||| ||||||
Sbjct: 18 taacccgtagatccgaacttgtg 40
