miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27357_mdo-mir-31:mirbase
Length = 87
Score = 58.0 bits (29), Expect = 1e-09
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgttaaattgaaatccctgctatatcaacatattgccatt 80
|||||||||||||||||||||||| || ||| | |||||||| ||||||||||||||
Sbjct: 12 aggcaagatgttggcatagctgttgaactgaga-acctgctatgccaacatattgccatc 70
Query: 81 tttct 85
|||||
Sbjct: 71 tttct 75
>25922_gga-mir-31:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgttaa 46
||||||||||||||||||||||||||
Sbjct: 25 aggcaagatgttggcatagctgttaa 50
>31456_oan-mir-31:mirbase
Length = 136
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 gaaggcaagatgttggcatagctgtt 44
||||||||||||||||||||||||||
Sbjct: 15 gaaggcaagatgttggcatagctgtt 40
>34252_dre-mir-31:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 ggcaagatgttggcatagctgttaa 46
|||||||||||||||||||||||||
Sbjct: 9 ggcaagatgttggcatagctgttaa 33
>25738_xtr-mir-31:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgtt 44
||||||||||||||||||||||||
Sbjct: 17 aggcaagatgttggcatagctgtt 40
>26429_tgu-mir-31:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgtt 44
||||||||||||||||||||||||
Sbjct: 25 aggcaagatgttggcatagctgtt 48
>31812_mmu-mir-31:mirbase
Length = 106
Score = 48.1 bits (24), Expect = 1e-06
Identities = 55/64 (85%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgttaaattgaaatccctgctatatcaacatattgccatt 80
|||||||||| ||||||||||||| || ||| | |||||||| ||||||||||||||
Sbjct: 28 aggcaagatgctggcatagctgttgaactgaga-acctgctatgccaacatattgccatc 86
Query: 81 tttc 84
||||
Sbjct: 87 tttc 90
>32694_rno-mir-31:mirbase
Length = 106
Score = 48.1 bits (24), Expect = 1e-06
Identities = 55/64 (85%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgttaaattgaaatccctgctatatcaacatattgccatt 80
|||||||||| ||||||||||||| || ||| | |||||||| ||||||||||||||
Sbjct: 28 aggcaagatgctggcatagctgttgaactgaga-acctgctatgccaacatattgccatc 86
Query: 81 tttc 84
||||
Sbjct: 87 tttc 90
>33042_rno-mir-3554:mirbase
Length = 118
Score = 48.1 bits (24), Expect = 1e-06
Identities = 55/64 (85%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 21 aggcaagatgttggcatagctgttaaattgaaatccctgctatatcaacatattgccatt 80
|||||||||| ||||||||||||| || ||| | |||||||| ||||||||||||||
Sbjct: 85 aggcaagatgctggcatagctgttgaactgaga-acctgctatgccaacatattgccatc 27
Query: 81 tttc 84
||||
Sbjct: 26 tttc 23
>34813_spu-mir-31:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 aaggcaagatgttggcatagctgt 43
||||||||||||||||||||||||
Sbjct: 18 aaggcaagatgttggcatagctgt 41
>34869_sko-mir-31:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgtt 44
||||||||||||||||||||||||
Sbjct: 21 aggcaagatgttggcatagctgtt 44
>24656_bfl-mir-31:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ggcaagatgttggcatagctgtt 44
|||||||||||||||||||||||
Sbjct: 20 ggcaagatgttggcatagctgtt 42
>26659_cfa-mir-31:mirbase
Length = 59
Score = 46.1 bits (23), Expect = 5e-06
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgttaaattgaaatccctgctatatcaacatattgccat 79
|||||||||| ||||||||||||| || ||| | |||||||| ||||||||||||||
Sbjct: 1 aggcaagatgctggcatagctgttgaactgaga-acctgctatgccaacatattgccat 58
>26980_eca-mir-31:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 5e-06
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgttaaattgaaatccctgctatatcaacatattgccat 79
|||||||||| ||||||||||||| || ||| | |||||||| ||||||||||||||
Sbjct: 8 aggcaagatgctggcatagctgttgaactgaga-acctgctatgccaacatattgccat 65
>38106_bma-mir-72:mirbase
Length = 115
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 aaggcaagatgttggcatagctg 42
|||||||||||||||||||||||
Sbjct: 17 aaggcaagatgttggcatagctg 39
>38856_lgi-mir-31:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctg 42
||||||||||||||||||||||
Sbjct: 21 aggcaagatgttggcatagctg 42
>38737_cte-mir-31:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctg 42
||||||||||||||||||||||
Sbjct: 21 aggcaagatgttggcatagctg 42
>38622_ppc-mir-72:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctg 42
||||||||||||||||||||||
Sbjct: 24 aggcaagatgttggcatagctg 45
>38534_crm-mir-72:mirbase
Length = 113
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctg 42
||||||||||||||||||||||
Sbjct: 21 aggcaagatgttggcatagctg 42
>38308_cel-mir-72:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctg 42
||||||||||||||||||||||
Sbjct: 17 aggcaagatgttggcatagctg 38
>35182_aae-mir-31:mirbase
Length = 149
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 ggcaagatgttggcatagctg 42
|||||||||||||||||||||
Sbjct: 52 ggcaagatgttggcatagctg 72
>36013_cqu-mir-31:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 ggcaagatgttggcatagctg 42
|||||||||||||||||||||
Sbjct: 13 ggcaagatgttggcatagctg 33
>39077_sme-mir-31b-3:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 20 aaggcaagatgttggcatagctgttaaa 47
||||||||||| ||||||||||| ||||
Sbjct: 2 aaggcaagatgctggcatagctgataaa 29
>39076_sme-mir-31b-2:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 20 aaggcaagatgttggcatagctgttaaa 47
||||||||||| ||||||||||| ||||
Sbjct: 2 aaggcaagatgctggcatagctgataaa 29
>39075_sme-mir-31b-1:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 20 aaggcaagatgttggcatagctgttaaa 47
||||||||||| ||||||||||| ||||
Sbjct: 13 aaggcaagatgctggcatagctgataaa 40
>24814_cin-mir-31:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ggcaagatgttggcatagct 41
||||||||||||||||||||
Sbjct: 17 ggcaagatgttggcatagct 36
>25319_csa-mir-31:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ggcaagatgttggcatagct 41
||||||||||||||||||||
Sbjct: 17 ggcaagatgttggcatagct 36
>27687_mml-mir-31:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgtt 44
|||||||||| |||||||||||||
Sbjct: 8 aggcaagatgctggcatagctgtt 31
>28194_mne-mir-31:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgtt 44
|||||||||| |||||||||||||
Sbjct: 8 aggcaagatgctggcatagctgtt 31
>28282_ggo-mir-31:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgtt 44
|||||||||| |||||||||||||
Sbjct: 8 aggcaagatgctggcatagctgtt 31
>28397_hsa-mir-31:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgtt 44
|||||||||| |||||||||||||
Sbjct: 8 aggcaagatgctggcatagctgtt 31
>30069_ppa-mir-31:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgtt 44
|||||||||| |||||||||||||
Sbjct: 8 aggcaagatgctggcatagctgtt 31
>30183_ptr-mir-31:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgtt 44
|||||||||| |||||||||||||
Sbjct: 8 aggcaagatgctggcatagctgtt 31
>30787_ppy-mir-31:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgtt 44
|||||||||| |||||||||||||
Sbjct: 8 aggcaagatgctggcatagctgtt 31
>33171_bta-mir-31:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 aggcaagatgttggcatagctgtt 44
|||||||||| |||||||||||||
Sbjct: 25 aggcaagatgctggcatagctgtt 48
>35003_dpu-mir-31:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 gaaggcaagatgttggcatagctg 42
||||||||||||| ||||||||||
Sbjct: 19 gaaggcaagatgtcggcatagctg 42
>35356_ame-mir-31a:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 gaaggcaagatgttggcatagctg 42
||||||||||||| ||||||||||
Sbjct: 25 gaaggcaagatgtcggcatagctg 48
>37575_ngi-mir-31a:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 gaaggcaagatgttggcatagctg 42
||||||||||||| ||||||||||
Sbjct: 1 gaaggcaagatgtcggcatagctg 24
>37607_nlo-mir-31a:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 gaaggcaagatgttggcatagctg 42
||||||||||||| ||||||||||
Sbjct: 1 gaaggcaagatgtcggcatagctg 24
>37643_nvi-mir-31a:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 gaaggcaagatgttggcatagctg 42
||||||||||||| ||||||||||
Sbjct: 25 gaaggcaagatgtcggcatagctg 48
